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Page AdvancedAlgorithms This is the Wiki for a project oriented version of P4. Here you can find a StudentList Direct links to topics $ Algorithmic problems …

Genome Comparison and RNA Analysis Lectures Date Lecture* *Materials Genome Comparison 03.06.2011 Segment Match Refinement script 12 MatchRe…

Index Data Structures Lectures Date Lecture* *Materials (Enhanced) Suffix Array 09.05.2011 Suffix Array Construction and Searching script 07…

Online String Searching and Filtering Lectures Date Lecture* *Materials Online Searching 11.04.2011 Introduction, Horspool, Wu Manber script…

Page AlDaBiWS10 Willkommen im Wiki der Vorlesung "Algorithmen und Datenstrukturen für Bioinformatik" Nachrichten * 17.09.2010 (Reinert): Das Semester beginnt …

Here is all the material for the third block (lectures 10 and 11). * Download the lecture notes

Here is all the material for the first block (lectures 1 and 2). * Download the lecture notes * Chapter of Motwani book * Review paper by Karp: Randomize…

Here is all the material for the third block (lectures 6 and 7). * Download the lecture notes

Here is all the material for the third block (lectures 8 and 9). * Download the lecture notes

Page AlgorithmsWS12 Welcome to the Wiki of the MSc lectures Algorithms News 27.03.2013: The second exam will be on Monday, April 15th (12 14, Arnimallee 6, SR03…

Page AlgorithmsWS13 Welcome to the Wiki of the MSc lectures Algorithms (19712) News Klausureinsicht 2. Prüfung : 30 April 2014, 9 10h, T9, R012 Nachklausur…

Algorithms (WiSe 2014) Welcome to the Wiki of the MSc lectures Algorithms (VL: 19400501, UE: 19400502) News * The results of the second exam are online …

Analysis Methods and algorithm design Lectures Date Lecture* *Materials 19.10.2010 Run time analysis I runtime.pdf 21.10.2010 Run time analys…

Analysis Methods and algorithm design Lectures Date Lecture* *Materials 18.10.2011 Run time analysis I runtime.pdf 20.10.2011 Run time analys…

BScEfficientExactMotifDiscovery Implementation of an existing motif discovery algorithm in SeqAn. Background The goal of motif finding is the detection of novel…

Combinatorial Optimization Lectures Date Lecture* * Lecture Material Additional Material 20.1.2011 Constraint Programming ConstrProg.pdf …

Combinatorial Optimization Lectures Date Lecture* * Lecture Material Additional Material 19.01.2012 Constraint Programming ConstrProg.pdf Survey …

Computability and Complexity Theory Lectures Date Lecture* * Lecture Material Additional Material 02.02.2012 Turing machines Comput1.pdf 07.02….

Page ForumSpace Thsi page will be the discussion forum. Lecture 1 REINERT (30.4): Hier könnte eine ausgearbeitetere Version der Vorlesungsabfolge stehen. Oder …

Page Genomics12 Welcome to the Wiki of the MSc lecture Genomics. News The 2nd exam will be on May 13th (Monday), 10 12h, room 049 / Takustr. 9 Bonus Review: Ther…

Page GenomicsLecture9Materials The script (lecture notes) for lectures 8/9 can be found on the wikipage for lecture 8. In that lecture, additional material about …

Graph algorithms Lectures Date Lecture* * Lecture Material Additional Material 16.11.2010 Shortest paths ShortestPaths.pdf L. Schrijver, Combi…

Graph algorithms Lectures Date Lecture* * Lecture Material Additional Material 15.11.2011 Shortest paths ShortestPaths.pdf L. Schrijver, Combina…

Content according to Studienordnung Es werden vertieft Themen aus folgenden Gebieten behandelt: * Verfahren für exaktes und approximatives Suchen in Strings, F…

Lectures Date Lecture* *Materials 16.12.2010 Branch and Cut Intro b and c.pdf, Webpage http://www2.iwr.uni heidelberg.de/groups/comopt/software/PORT…

Combinatorial optimization and integer linear programming Lectures Date Lecture* *Materials 15.12.2011 Combinatorial Optimization ILP Introduction …

Linear optimization Lectures Date Lecture* * Lecture Material Additional Material 30.11.2010 Optimization problems OptProbl.pdf AdditionalMate…

Linear Optimization Lectures Date Lecture* * Lecture Material Additional Material 29.11.2010 Optimization problems Optprobl.pdf Additional Mat…

Page OptimizationWS12 Welcome to the Wiki of the MSc lecture Optimization. News (27.3.2013)The 2nd exam (together with Discrete Mathematics for Bioinformatic…

Page OptimizationWS13 Welcome to the Wiki of the MSc lecture Optimization (19182). News Update Klausurnoten Klausureinsicht 2. Prüfung : 30 April 2014, 9…

Optimization (WiSe 2014) Welcome to the Wiki of the MSc lecture Optimization (VL: 19400701, UE: 19400702) News * Results of 2nd exam are online General …

Projektmanagement im Softwarebereich Seqan 2010 Das ist die vorläufige Wiki Seite zum Praktikum Projektmanagement im Softwarebereich Seqan. Aufteilung auf di…

Projektmanagement im Softwarebereich Seqan 2011 Das ist die vorläufige Wiki Seite zum Praktikum Projektmanagement im Softwarebereich Seqan. Aufteilung auf di…

PSMB_Seqan_2014_large_insertd Hintergrund Lange Sequenzstücke, die im Donor aber nicht in der Referenz enthalten sind, lassen sich nur schwer mit einzelnen Reads…

PSMB_Seqan_2015_p5 Introduction The q gram(k mer) Index in seqan allows looking up k mers over the index in constant time. However it has two limitations. The fi…

Learning units No learning units for the introductory lecture. Please see the materials for Lecture 1 for the first units. Lectures 00_CPM_WS14_Introduction 00_C…

Forschungsmodul: Proteomics VL UE (WiSe 2014) Welcome to the Wiki of the MSc lecture Proteomics (VL: 19400901, UE: 19400902) In this lecture we will cover the ba…

Page RnaSeqP4 This is the project page of the RNA Seq group. Students Mail an alle Gruppenmitglieder: AA2010SS RNASeq bei lists.spline.de Name email Cori…

PISB SeqAn Teilprojekte Segment Aligner Hintergrund: Hierarchisches Genomalignment Um das Alignment ganzer Genome zu ermöglichen, werden in der Regel zunächst …

Sequence Analysis SS 2013 Welcome to the Wiki of the Lecture Sequence Analysis. This module consists of 2 hours lecture, 2 hours exercise and 2 hours seminar. The…

Sequence Analysis, SoSe 2014 (LV Nr. 19716, 19716a, 19716b) Welcome to the Wiki of Sequence Analysis. This module consists of 2 hours lecture, 2 hours exercis…

Sequence Analysis, SoSe 2015 (LV Nr. 19401601 (V), 19401602 (Ü), 19401611 (S)) Welcome to the Wiki of Sequence Analysis. This module consists of 2 hours lectu…

Sequence Analysis, SoSe 2016 *(LV Nr. 19401601 (V), 19401602 (Ü), 19401611 (S)) Welcome to the Wiki of Sequence Analysis. Dear Students. We will use for the lec…

Return to ABI Homepage DEPRECATED! Go to our new wiki https://www.mi.fu berlin.de/en/inf/groups/abi/ Internal infos at https://wikis.fu berlin.de/display/abi/ …

Willkommen im Vorlesungs Wiki Algorithmen in der Systembiologie (P3) SS 2011 News Klausurergebnisse Ergebnisse Nachklausur Allgemeine Informationen S…

Willkommen im Vorlesungs Wiki Algorithmen in der Systembiologie (P3) SS 2012 News Klausurergebnisse Ergebnisse Nachklausur Allgemeine Informationen SWS…

Algorithms (WiSe 2015) Welcome to the Wiki of the MSc lectures Algorithms (VL: 19400501, UE: 19400502) General Information SWS: 2 2 ECTS: 6 Lecturers: Alexande…

Algorithms (WiSe 2016) Welcome to the Wiki of the MSc lectures Algorithms (VL: 19400501, UE: 19400502) General Information SWS: 2 2 ECTS: 6 Lecturers: Alexande…

Welcome to our Forschungsseminar wiki Organizer Prof. Dr. Alexander Bockmayr Description The Forschungsseminar is a regular (weekly) meeting of the Mathematic…

Welcome to the Lectures Wiki Metabolic Networks SS 2014 News General information SWS: 3, ECTS: 5 Lecturer: Alexander Bockmayr / Annika Röhl Language: English / …

Welcome to the Lectures Wiki Metabolic Networks SS 2015 News General information SWS: 2 1, ECTS: 5 Lecturer: Alexander Bockmayr Tutor: Therese Lorenz Language:...

Welcome to the Lectures Wiki Metabolic Networks SS 2016 News General information SWS: 2 1, ECTS: 5 Lecturer: Alexander Bockmayr Tutor: Annika Röhl Language: En…

Welcome to the lectures wiki Netzwerkanalyse News The oral exams will be held on Friday, 12 July 2013 (see schedule below). For the first part, see the w…

Welcome to the Lectures Wiki Netzwerkanalyse SS 2014 News Mündliche Prüfungen: Freitag, 18. Juli 2014, ab 8.00 Uhr, R 142, A6 (Dienstzimmer Bockmayr) G…

Welcome to the Lectures Wiki Netzwerkanalyse SS 2015 News Oral exams: Friday, 17 July 2015, 8 a.m. 2 p.m., R 142, A6 General Information SWS/credit hrs:...

Welcome to the Lectures Wiki Netzwerkanalyse SS 2017 News The oral exams will take place on Thursday, 20 July 2017, and Friday, 21 July 2017 in room 142, A…

Optimization (WiSe 2015) Welcome to the Wiki of the MSc lecture Optimization (VL: 19400701, UE: 19400702) General Information SWS: 2 2 ECTS: 6 Lecturers: Alexan…

Optimization (WiSe 2016) Welcome to the Wiki of the MSc lecture Optimization (VL: 19400701, UE: 19400702) General Information SWS: 2 2 ECTS: 6 Lecturers: Alexan…

Welcome to our Lectures Wiki Lectures Winter Term 2011/2012 * Discrete Mathematics for Bioinformatics (P1) * Molekulare Netzwerke (A) * Praktikum Se…

Welcome to the Mathlife Lectures Wiki The Mathematics in Life Sciences research group is working at the interface of mathematics and structural and systems biolo…

AgMathLife Web Preferences The following settings are web preferences of the AgMathLife web. These preferences overwrite the site level preferences in . and …

Wilkommen beim Wiki der Vorlesung Computerorientierte Mathematik I WS 2014/2015 News 18.04.2015: Die Einsicht der Nachklausur findet am 22.04. statt (8:00 10:...

Wilkommen beim Wiki der Vorlesung * Computerorientierte Mathematik II* SoSe 2015 News 05.08.: Die Nachbesprechung der Klausur findet am Donnerstag 13.8. in de…

Welcome to the Lecture Wiki of Computational Molecular Physics, SoSe 2014 under construction News General Lecture: Petra Imhof, Frank Noé, Marcus Weber, Burkh…

Welcome to the Computer Tutorial in Markov Modeling WS 2014/15 News Registration: Prior registration in either Campus Management OR KVV des Fachbereichs is req…

Welcome to the Computer Tutorial in Markov Modeling (PyEMMA) WS 2015/16 News 20.1.2016: The Workshop is fully booked! If you are able to fill a last minute c…

Welcome to the Computer Tutorial in Markov Modeling (PyEMMA) WS 2016/17 News For those who were not able to attend the workshop see here: Link to notebooks …

Welcome to the Computer Tutorial in Markov Modeling (PyEMMA) WS 2017/18 News 1 Feb 2018: Workshop is fully booked. Please enquire after 12 February about las…

Welcome to the Computer Tutorial in Markov Modeling (PyEMMA) WS 2018/19 News 21 Jan 2019: Workshop is fully booked. Please enquire after February 11 about la…

Welcome to the Computer Tutorial in Markov Modeling (PyEMMA) WS 2019/20 News 10 Feb 2019: Schedule online. 16 Jan 2019: Workshop is fully booked. Dates 5 …

Literature seminar Markov processes Students will review and present selected topics in the realm of inference and analysis of Markov processes. We will select a …

News Registration:For resident students, prior registration in Campus Management is required.If you miss the registration date, please use the form "Modulnachmeld…

Welcome to Markov Chains and Markov Models SoSe 2015 News 08.05.2015 Please find the notes used for the lectures in section Content below. We will try to upd…

Welcome to the Computer Tutorial in Markov Modeling WS 2020/21 News 23 Feb 2021: The course is booked out. 05 Feb 2021: This year's workshop will for t…

Welcome to the Computer Tutorial in Markov Modeling WS 2021/22 News The workshop is booked out! This year's workshop will for the second time feature P…

Welcome to Markov Chains and Markov Models summer term 2016 News 8.7. MCMM presentation dates times set. See below. General Lecture ID: 19216201 192162…

Welcome to the Lecture Wiki Methods of Molecular Simulation, SoSe 2014 under construction News General Lecture: Frank Noé, Petra Imhof, Nuria Plattner Exerc…

19133 Forschungsprojekt:Moleküldynamik und Stochastische Simulation under construction Allgemein Dozent: Frank Noé Sprache: Deutsch SWS: 4 LP: 5 Termine Ers…

Molecular Simulation II Summer term 2017 General Lecturer: Petra Imhof Computer Lab: Chris Wehmeyer, Petra Imhof Language: English Course ID: 20115901 20115…

Content to follow

Welcome to the lecture wiki Advanced Molecular Simulation WS 2014/15 News Registration: Prior registration in either Campus Management OR KVV des Fachbereichs i…

Welcome to the lecture wiki * Advanced Molecular Simulation* WS 2015/16 News Registration: Prior registration in Campus Management AND KVV des Fachbereichs is r…

Willkommen im Wiki der Numerik I SoSe 2014 News 15.10.: Studierende, die die Klausur zwar bestanden aber ihre Note verbessern möchten, können die Nachklausur e…

For lecture page see: Numerik IVc

Welcome to the Lecture Wiki of Reaktions Diffusions Simulationen für Signaltransduktionskaskaden, SoSe 2014 General Lecturer: Frank Noé Language: English/German…

Welcome to the Lecture Wiki of Reaktions Diffusions Simulationen für Signaltransduktionskaskaden, SoSe 2015 News 22.4.2015 Registration FU students please sig…

Welcome to Reaction Diffusion Dynamics, summer term 2016 News 21.7.2016: The course has been moved to Takustr. 9, K048 (basement) 14.7.2016: Registration c…

Welcome to Reaction Diffusion Dynamics, summer term 2017 News General Lecturer: Chris Wehmeyer Assistant: Chris Fröhner, Moritz Hoffmann Language: English co…

Dates Blockkurs 23 to 27 July 2018 9 15 h Takustr. 9 K46 (basement) News Depending on the number of participants the course may be moved from the computer …

Welcome to Software Lab "Modern Methods of Theoretical Physics A" summer term 2015 News General Lecturer: Frank Noé, Christoph Wehmeyer Language: English…

Willkommen im Wiki der Veranstaltungsname Semester News Allgemeines Vorlesung: Übungen: Sprache: SWS: ; LPs/Credits: Zielgruppe: Voraussetzung…

Welcome to the lecture/seminar wiki Veranstaltungsname Semester News General Lecture: Exercises: Language: Students: Requirements: Objectives: …

Welcome to Scientific Computing with Python, summer term 2018 News 07.06.2018 The compact course is cancelled due to organisational reasons. General Lecture I…

Welcome to Scientific Programming with Python, summer term 2016 News 21.7.: The course has been moved to Arnimallee 6, r. 030 (PC pool) 14.7.: Registration clo…

Welcome to Scientific Programming with Python, summer term 2018 News 16.3.: Course starts 9 April, registration via email only, see below General Lecture ID: …

Literature Seminar: Simulation and Analysis of Stochastic Processes Seminar zu Numerik IVc (Stochastische Prozesse) General Information Lecturer: Bettina Keller…

Welcome to the Software Project Computational Physics and Scientific Computing WS 2015/16 News Registration: For resident students, prior registration in Campu…

Welcome to the Software Project Scientific Computing WS 2014/15 News Registration: Prior registration in either Campus Management OR KVV des Fachbereichs is re…

Welcome to the lecture wiki Stochastic Processes (winter term 2015/16) General Lecture: Felix Höfling Problems: Jan Hendrik Prinz, Felix Höfling Languag…

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* Link to: CMB Home * Home * Lectures * Group Seminar * Talks * Office FAQ * Hardware Compute Resources

Statistics for CompMolBio Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and upload…

Welcome to the Lectures Wiki "Regulation and control of molecular networks" WS 2014/15 News We will have a double lecture (10 12, 12 14) on December 12 and no l…

Welcome to the Seminar Wiki "Time evolving networks in medical applications" SS 2015 News Start on June 30: 9:30 in SR119, A3. Vorbesprechung am 14.4.2015, 10:1…

Willkommen beim Wiki "Statistik", WS 2015/16 Contact Susanna Röblitz susanna.roeblitz #64;zib.de ZIB, Takustraße 7, Raum 4104 Office hours: by email appointm…

Welcome to the DiBiMath Lectures Wiki The Discrete Biomathematics research group is working at the interface of mathematics and systems biology. Within this grou…

DiBiMath Web Preferences The following settings are web preferences of the DiBiMath web. These preferences overwrite the site level preferences in . and ,...

Wartung Fachbereich Mathematik und InformatikIT Dienst Wartungsplanung bzw. status für die IT Wartung am Mittwoch, 8. Januar 2020 Details und Zeitplan zu den …

EAA Austauschseite Hier könnten wir in Zukunft Infos über unsere EAA Vorbereitungen austauschen. News * 27.03.2008: Link hinzugefügt zu EAA Zusammenfassung vo…

9th "Programming for Evolutionary Biology" Course March 2nd – March 18 2020 Room 019 in Arnimallee 3 Berlin, Germany Organizer: Katja Nowick, Free U…

Discrete Mathematics for Bioinformatics Web page for the course Discrete Mathematics for Bioinformatics held in winter 2007/2008 at Freie Universität Berlin. The …

Links im Sommersemester 2009 * C für Fortgeschrittene * Algorithmic Bioinformatics (ABI) * Journal Club Computational Biology * MSc Thesis * Molec…

Dr. Stephan Salinger Certified ScrumMaster I am no longer working at Freie Universität Berlin but at Hochschule für Wirtschaft und Technik Berlin (HTW Berlin). S…

* Set D = http://www.inf.fu berlin.de/inst/ag se/teaching/V EMPIR 2010 * Set ERGS = http://www.inf.fu berlin.de/inst/ag se/teaching/V EMPIR 2010/intern V Ü Em…

* Set D = http://www.inf.fu berlin.de/inst/ag se/teaching/V EMPIR 2011 * Set ERGS = http://www.inf.fu berlin.de/inst/ag se/teaching/V EMPIR 2011/intern V Ü Em…

V Ü Empirical Evaluation in Informatics (Empirische Bewertung in der Informatik) SS 2012 This is the homepage of the lecture (Vorlesung) "Empirische Bewertung in …

V Ü Empirical Evaluation in Informatics (Empirische Bewertung in der Informatik) SS 2014 This is the homepage of the lecture (Vorlesung) "Empirische Bewertung in …

V Ü Empirical Evaluation in Informatics (Empirische Bewertung in der Informatik) SS 2015 This is the homepage of the lecture Empirical Evaluation in Informatics (...

V Ü Empirical Evaluation in Informatics (Empirische Bewertung in der Informatik) SS 2017 This is the homepage of the lecture Empirical Evaluation in Informatics (...

V Ü Empirical Evaluation in Informatics (Empirische Bewertung in der Informatik) SS 2018 This is the homepage of the lecture Empirical Evaluation in Informatics (...

V Ü Empirical Evaluation in Informatics (Empirische Bewertung in der Informatik) SS 2019 This is the homepage of the lecture Empirical Evaluation in Informatics (...

V Ü Empirical Evaluation in Informatics (Empirische Bewertung in der Informatik) SS 2020 This is the homepage of the lecture Empirical Evaluation in Informatics (...

Lecture course Software Engineering (Vorlesung Softwaretechnik) SS 2020 Description Software Engineering is the discipline of software construction on a large sc…

Lecture course Software Engineering (Vorlesung Softwaretechnik) SS 2021 Description Software Engineering is the discipline of software construction on a large s…

Lecture course Software Engineering (Vorlesung Softwaretechnik) SS 2022 Description Software Engineering is the discipline of software construction on a large s…

Lecture course Software Engineering (Vorlesung Softwaretechnik) SS 2023 Description Software Engineering is the discipline of software construction on a large s…

Lecture course Software Engineering (Vorlesung Softwaretechnik) SS 2024 Description Software Engineering is the discipline of software construction on a large s…