Page Genomics12
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News
The 2nd exam will be on May 13th (Monday), 10-12h, room 049 / Takustr. 9
Bonus Review: There will be a third "bonus" review on Thursday (
31.1.2013) in which students can get a maximum of 30 additional points. The test will cover the two RNAseq lectures as well as the Chip-seq lecture of Tuesday (29.1.2013). The review will begin at 8:30 AM and go for 45min. The answers to the questions will be discussed from 9:15-9:45.
The last exercise scheduled for this year for the 20th of December, will not take place. The current plan is hold a revision course before the exam as a replacement.
Room has changed for lecture on Tuesdays, 14-16h: Takustr. 9 / SR 005
The second and following Exercises start at 8:30.
Exercises start Thursday 25th at 8:15 am.
Exam results
Exam 1
| xxx9094 |
88 |
1.3 |
| xxx938 |
64 |
3.0 |
| xxx4884 |
90 |
1.3 |
| xxx5132 |
89 |
1.3 |
| xxx8987 |
98 |
1.0 |
| xxx480 |
91 |
1.3 |
| xxx671 |
95 |
1.0 |
| xxx1347 |
90 |
1.3 |
| xxx6104 |
91 |
1.3 |
| xxx2290 |
96 |
1.0 |
| xxx7304 |
83 |
1.7 |
| xxx8601 |
91 |
1.3 |
| xxx7797 |
31 |
5.0 |
| xxx964 |
76 |
2.3 |
| xxx5525 |
63 |
3.0 |
| xxx2657 |
87 |
1.3 |
| xxx2117 |
81 |
2.0 |
| xxx1739 |
47 |
4.0 |
| xxx1308 |
70 |
2.7 |
| xxx2596 |
72 |
2.3 |
| xxx9991 |
13 |
5.0 |
| xxx5975 |
82 |
1.7 |
| xxx4257 |
98 |
1.0 |
| xxx2305 |
86 |
1.7 |
| xxx5583 |
72 |
2.3 |
| xxx9870 |
79 |
2.0 |
| xxx3346 |
86 |
1.7 |
| xxx6546 |
43 |
5.0 |
| xxx9252 |
76 |
2.3 |
Times and rooms
Rooms and timings
Schedule
| Date |
Lecture |
Lecturer |
| 16.10.-13.11. |
Algorithms for approximate string search in NGS data |
|
| 16.10.2012 |
Lecture 1: NGS technologies |
Robinson |
| 23.10.2012 |
Lecture 2: Read mapping considerations |
Reinert |
| 30.10.2012 |
Lecture 3: Myers bitvector edit distance algorithm |
Reinert |
| 06.11.2012 |
Lecture 4: Hierarchical pigeonhole filter |
Reinert |
| 13.11.2012 |
Lecture 5: Index based methods and the BWT |
Reinert |
| 20.11.-27.11. |
Methods for analysis of metagenomes |
Reinert |
| 20.11.2012 |
Lecture 6: Problems in metagenome analysis I |
Reinert |
| 22.11.2012 |
Review 1 (during exercises) |
|
| 27.11.2012 |
Lecture 7: Problems in metagenome analysis II |
Reinert |
| 04.12.-15.01. |
Computing genetic variations |
|
| 04.12.2012 |
Lecture 8: Variant Calling and Annotation I |
Robinson |
| 11.12.2012 |
Lecture 9: Variant Calling and Annotation II |
Robinson |
| 18.12.2012 |
Lecture 10: Structural Variants I |
Robinson |
| 08.01.2013 |
Lecture 11: Structural Variants II |
Robinson |
| 15.01.2013 |
Review 2 (during exercises) |
|
| .??.??-??.??. |
Quantitative NGS analysis |
|
| 15.01.2013 |
Lecture 12: RNA-seq I |
Robinson |
| 22.01.2013 |
Lecture 13: RNA-seq II |
Robinson |
| 29.01.2013 |
Lecture 14: ChIP-seq I |
Robinson |
| 05.02.2013 |
Lecture 15: ChIP-Seq II |
Robinson |
| 12.02.2013 |
Exam |
Exercises
Requirements for Aktive Teilnahme
You need to reach 50% of all points of the two reviews.
Repetitorium on 7 Feb. 2013
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