Page Genomics12

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The 2nd exam will be on May 13th (Monday), 10-12h, room 049 / Takustr. 9

Bonus Review: There will be a third "bonus" review on Thursday (31.1.2013) in which students can get a maximum of 30 additional points. The test will cover the two RNAseq lectures as well as the Chip-seq lecture of Tuesday (29.1.2013). The review will begin at 8:30 AM and go for 45min. The answers to the questions will be discussed from 9:15-9:45.

The last exercise scheduled for this year for the 20th of December, will not take place. The current plan is hold a revision course before the exam as a replacement.

Room has changed for lecture on Tuesdays, 14-16h: Takustr. 9 / SR 005

The second and following Exercises start at 8:30.

Exercises start Thursday 25th at 8:15 am.

Exam results

Exam 1

xxx9094 88 1.3
xxx938 64 3.0
xxx4884 90 1.3
xxx5132 89 1.3
xxx8987 98 1.0
xxx480 91 1.3
xxx671 95 1.0
xxx1347 90 1.3
xxx6104 91 1.3
xxx2290 96 1.0
xxx7304 83 1.7
xxx8601 91 1.3
xxx7797 31 5.0
xxx964 76 2.3
xxx5525 63 3.0
xxx2657 87 1.3
xxx2117 81 2.0
xxx1739 47 4.0
xxx1308 70 2.7
xxx2596 72 2.3
xxx9991 13 5.0
xxx5975 82 1.7
xxx4257 98 1.0
xxx2305 86 1.7
xxx5583 72 2.3
xxx9870 79 2.0
xxx3346 86 1.7
xxx6546 43 5.0
xxx9252 76 2.3

Times and rooms

Rooms and timings

Event Day Time Address Room
Lecture Tue 14-16 Takustraße 9 005
Exercise Thu 08-10 Takustraße 9 006

Schedule

Date Lecture Lecturer
16.10.-13.11. Algorithms for approximate string search in NGS data  
16.10.2012 Lecture 1: NGS technologies Robinson
23.10.2012 Lecture 2: Read mapping considerations Reinert
30.10.2012 Lecture 3: Myers bitvector edit distance algorithm Reinert
06.11.2012 Lecture 4: Hierarchical pigeonhole filter Reinert
13.11.2012 Lecture 5: Index based methods and the BWT Reinert
20.11.-27.11. Methods for analysis of metagenomes Reinert
20.11.2012 Lecture 6: Problems in metagenome analysis I Reinert
22.11.2012 Review 1 (during exercises)  
27.11.2012 Lecture 7: Problems in metagenome analysis II Reinert
04.12.-15.01. Computing genetic variations  
04.12.2012 Lecture 8: Variant Calling and Annotation I Robinson
11.12.2012 Lecture 9: Variant Calling and Annotation II Robinson
18.12.2012 Lecture 10: Structural Variants I Robinson
08.01.2013 Lecture 11: Structural Variants II Robinson
15.01.2013 Review 2 (during exercises)  
.??.??-??.??. Quantitative NGS analysis  
15.01.2013 Lecture 12: RNA-seq I Robinson
22.01.2013 Lecture 13: RNA-seq II Robinson
29.01.2013 Lecture 14: ChIP-seq I Robinson
05.02.2013 Lecture 15: ChIP-Seq II Robinson
12.02.2013 Exam

Exercises

Discussed at Excerise
25.10.2012 Exercise 1
01.11.2012 Exercise 2
08.11.2012 Exercise 3
15.11.2012 Exercise 4
29.11.2012 Exercise 5 / Exercise 5 with solution
06.12.2012 Exercise 6
13.12.2012 Exercise 7
10.01.2013? Exercise 8

Requirements for Aktive Teilnahme

You need to reach 50% of all points of the two reviews.

Repetitorium on 7 Feb. 2013

Topic attachments
I Attachment Action Size Date Who Comment
MLvsMAP.pdfpdf MLvsMAP.pdf manage 550.3 K 14 Dec 2012 - 11:20 UnknownUser  
varcall.pdfpdf varcall.pdf manage 2240.4 K 14 Dec 2012 - 11:21 UnknownUser Lecture 8/9 Variant Calling
Topic revision: r37 - 17 Apr 2013, AnjaKasseckert
 
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