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454genfusionen
in ABI
Page 454genfusionen This page is a collection of ideas concerning 454 RNA sequencing data analysis. TODOs 25.3.: General Questions * which reference sequence …
DfgWorkPackages
in ABI
Page DfgWorkPackages This is the list of work packages from the DFG project. Design and verification of a suitable model for cross species genome compari son (...
JournalClubSS11
in ABI
Page JournalClubSS11 Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress reports fr…
JournalClubWS11
in ABI
Page JournalClubWS11 Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress reports fr…
MethylationMapping
in ABI
Multi Split Mapping of NGS reads for variant detection Student Sabrina Krakau Academic Advisor Prof. Dr. Knut Reinert, Anne Katrin Emde Expose The goal …
MultiSplitMappingNGS
in ABI
Multi Split Mapping of NGS reads for variant detection Student Kathrin Trappe Academic Advisor Prof. Dr. Knut Reinert, Anne Katrin Emde Expose The goal …
ProgressReportEmde-04-2010
in ABI
Page ProgressReportEmde 04 2010 Progress report Accomplishments in the last six months: General: * Read many papers on variant detection, notes taken here. …
ProgressReportEmde-05-2011
in ABI
Page ProgressReportEmde 05 2011 Progress Report (under construction) Accomplishments in the last six months: SplazerS: * redid single end read simulation (co…
ProgressReportEmde-10-2010
in ABI
Page ProgressReportEmde 10 2010 Progress Report Accomplishments in the last six months: Split read mapping: * Finished implementation of splitRazers, poster…
Razers2Revision
in ABI
Page Razers2Revision General Points TODO: Wait for evaluation of Hobbes on human, execute class, update tables. Manuel : Section S5 was updated to reflect the u…
ResearchLogReneMaerker
in ABI
Algorithm Engineering for High Throughput Sequencing Data Summary During the last five years modern sequencing technologies have brought a super exponential grow…
ResearchLogs
in ABI
Research Logs * Genome Comparison (Birte Kehr, Manuel Holtgrewe) * Precursor Selection (Alexandra Zerck) * Indices and Applications (David Weese) * BW…
VariantDetectionAppliedPapers
in ABI
Page VariantDetectionAppliedPapers Collection of applied variant detection papers, with comments. Applied Papers Genome wide mapping and assembly of structural …
VariantDetectionPapers
in ABI
Page VariantDetectionPapers Remarks to papers concerning variant detection in NGS data. Method Papers Simple variation VarScan: variant detection in massively …
VariantDetectionReviewPapers
in ABI
Page VariantDetectionReviewPapers A collection of review papers concerning variant detection, not yet with comments. Reviews Genome structural variation discove…
VocabularyAnneKatrin
in ABI
Page VocabularyAnneKatrin Here I collect pieces of information and "vocabulary" that at some point seemed important. Mixture Models In statistics, a probability …
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