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AlDaBiWS10
in ABI
Page AlDaBiWS10 Willkommen im Wiki der Vorlesung "Algorithmen und Datenstrukturen für Bioinformatik" Nachrichten * 17.09.2010 (Reinert): Das Semester beginnt …
BScGenAlignGraphs
in ABI
BScGenAlignGraphs Comparing graphs for genome alignment of multiple sequences under the presence of large structural events. Schedule Moritz Finishing Date …
BScParallelBamIO
in ABI
BScParallelBamIO Implementation of parallel de /compression of BAM files. * Parallel Bam I/O Schedule/Report Background BAM 1 files are used for storing ali…
BScReadRealignment
in ABI
BScReadRealignment Comparing short read realignment algorithms. Background Read alignment is a crucial step for the analysis of Next Generation Sequencing (NGS) …
BscSeqAnAlphabetReduction
in ABI
BscSeqAnAlphabetReduction ((short description what this page is about)) introduction "Research on the functional redundancy of amino acids dates back t…
DeepCoffee
in ABI
Extending SeqAn::TCoffe for deep alignments Area Mulitple Sequence Alignment Topic tbd. Timeline References 1. Rausch, T, Sergey Koren, Gennady Denisov, Da…
IntegerLinearOptimization
in ABI
Lectures Date Lecture* *Materials 16.12.2010 Branch and Cut Intro b and c.pdf, Webpage http://www2.iwr.uni heidelberg.de/groups/comopt/software/PORT…
Lecture4Materials
in ABI
Here is all the material for Lecture 4 * Download slides * Download lecture notes by A. Schrijver, CWI Amsterdam (Chap.4.2 4.4)
PMSB_OpenMS_2011
in ABI
Projektmanagement im Softwarebereich OpenMS 2011 Wiki Seite zum Praktikum Projektmanagement im Softwarebereich http://www.openms.de/ OpenMS 2011. Zeitplan…
PMSB_Seqan_2011
in ABI
Projektmanagement im Softwarebereich Seqan 2011 Das ist die vorläufige Wiki Seite zum Praktikum Projektmanagement im Softwarebereich Seqan. Aufteilung auf di…
PSMB_Seqan_2013_Suboptimal_Alignments
in ABI
Page PSMB_Seqan_2013_Suboptimal_Alignments Hintergrund: Suboptimale Alignments Lokale Alignments sind eine mächtige Methode um Sequenzhomologien zwischen zwei Se…
PSMB_Seqan_2015_p5
in ABI
PSMB_Seqan_2015_p5 Introduction The q gram(k mer) Index in seqan allows looking up k mers over the index in constant time. However it has two limitations. The fi…
PSMB_Seqan_fft
in ABI
Detection of homologous regions with FFT Given a set of sequences your task is to compute homologous segments for all pairs of the input set. The detection of hom…
Phylogeny
in ABI
Vorlesungen Phylogenetische Analyse Date Lecture* *Materials 16.12.2010 Branch and Cut Intro b and c.pdf, Webpage http://www2.iwr.uni heidelberg.de…
ResearchCooperations
in ABI
Research Cooperations The Reinert group at FU Berlin maintains research cooperations with German and international research groups. Note that this list here is no…
SegementAligner
in ABI
PISB SeqAn Teilprojekte Segment Aligner Hintergrund: Hierarchisches Genomalignment Um das Alignment ganzer Genome zu ermöglichen, werden in der Regel zunächst …
StellarMotifFinder
in ABI
Topic Motif finding using the STELLAR engine and SeqAn::TCoffee The project builds on work on exact local alignment by Kehr, Rausch, Emde and Reinert 1,2 . STEL…
ThesisScoreMatrix
in ABI
Substitution Matrix Generation Algorithms This Bachelor thesis gets you in touch with current research for string matching, modern implementation in C /SeqAn, sou…
WebStatistics
in ABI
Statistics for ABI Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads: …
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