Extending SeqAn::TCoffe for deep alignments

Area

Mulitple Sequence Alignment

Topic

tbd.

Timeline

References

1. Rausch, T, Sergey Koren, Gennady Denisov, David Weese, Anne-Katrin Emde, Andreas Döring, and Knut Reinert. 2009. “A Consistency-Based Consensus Algorithm for De Novo and Reference-Guided Sequence Assembly of Short Reads.” Bioinformatics (Oxford, England) 25 (9): 1118–24. doi:10.1093/bioinformatics/btp131.
2. Rausch, T, Anne-Katrin Emde, and Knut Reinert. 2008. “Robust Consensus Computation.” BMC Bioinformatics 9 (Suppl 10): P4. http://www.biomedcentral.com/content/pdf/1471-2105-9-s10-p4.pdf.