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Page ThesisMCRazerMcSpeedDifferentNumberOfCores
- Auf Tanne
- Reference: chr22.fa
- Reads: SRR006387.fastq_1.00000 (100,000)
| cores | real time | cpu time filtering | cpu time verifying |
|---|---|---|---|
| 1 | ~ 125 sec | ~ 106.4 sec | ~ 8.3 sec |
| 2 | ~ 97 sec | ~ 167.9 sec | ~ 8.5 sec |
| 3 | ~ 108 sec | ~ 266.1 sec | ~ 9.9 sec |
| 4 | ~ 115 sec | ~ 403.3 sec | ~ 11.3 sec |
- too many cores are counter productive
- how to find out how many are good?
- maybe use only three cores:
- two for filtering
- one for verification
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