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Bachelor

Master

Research Project

Ongoing Theses

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Bachelor

Master

Research Project

Completed Theses

Bachelor

Topic Type Student Academic Advisor Project Remark
Annotation of the wild guinea pig BSc Tino Schüllermann Camila Mazzoni, Knut Reinert SeqAn collaboration with external group
BLAST Implementation in SeqAn BSc Florian Siemer Jochen Singer, Knut Reinert SeqAn  
Fast BWT construction in small space BSc Lars Zerbe Jochen Singer, Knut Reinert SeqAn  
Flexbar BSc Sebastian Roskosch Jochen Singer SeqAn  
Implementation and Evaluation of a Myrimatch Adapter BSc Dimitri Schachmann Chris Bielow, Knut Reinert OpenMS  
Comparative Genomics with MEGAN and RazerS BSc Hannes Hauswedell David Weese, Knut Reinert SeqAn  
Complemented palindromes BSc Felix Heeger David Weese, Knut Reinert SeqAn  
Overlap Module for NGS Pipeline BSc Sabrina Krakau Marcel Schulz, David Weese SeqAn  
Suche nach Read-Profilen in ChIP-Seq Datensätzen BSc Tibor Pacalat Gogol-Döring, Knut Reinert    
Approximate String Matching (Hamming Distance) BSc Holger Schmeisky Manuel Holtgrewe, Knut Reinert SeqAn  
Implementing a Motif finder based on STELLAR and SeqAn::TCoffee BSc Vishalini Vimalakanthan Knut Reinert, Birte Kehr SeqAn  
Comparing graphs for genome alignment BSc Moritz Kiekeben Kathrin Trappe SeqAn  
Plagiatsvisualisierung in iOS BSc Jörn Ehmann Knut Reinert SeqAn  
Journaling raw sequences Bsc Svenja Mehringer René Rahn, Knut Reinert SeqAn  
Implementing a Peptide Indexer in SeqAn and OpenMS BSc N.N. Christopher Pockrandt, Knut Reinert SeqAn, OpenMS  
Evaluation of index based seeding strategies BSc Thimo Wellner Christopher Pockrandt SeqAn  

Master

Topic Type Student Academic Advisor Project Remark
Parallel suffix array construction Dipl David Iwanowitsch David Weese SeqAn  
Read mapping pipelines in KNIME MSc Kyanoush Yahosseini David Weese, Knut Reinert SeqAn  
Capture Compound MS analysis MSc Katharina Stenin Stephan Aiche, Knut Reinert OpenMS Collaboration with Caprotec
Implementation of a BlastX alternative MSc Hannes Hauswedel Jochen Singer, Knut Reinert SeqAn  
Develop a read mapper for bisulfite treated reads MSc Sabrina Krakau David Weese, Knut Reinert SeqAn  
GPGPU with SeqAn MSc Lars Lagner David Weese, Knut Reinert SeqAn  
Parallelism in SeqAn MSc Konrad Rudolph Manuel Holtgrewe, Knut Reinert SeqAn  
Incremental Substring Indices MSc Paul Pyl David Weese, Knut Reinert SeqAn  
Parallelization of RazerS MSc Martin Riese David Weese, Knut Reinert SeqAn  
Implementation of SCFGs in SeqAn MSc Jonas Heise Manuel Holtgrewe, Knut Reinert SeqAn  
Analysis of sequence variation in human genomes MSc Kerstin Neubert Anne-Katrin Emde, Knut Reinert SeqAn  
Multi read assignment MSc Leon Kuchenbecker Knut Reinert SeqAn  
Genomes per Mail MSc René Märker David Weese, Knut Reinert SeqAn  
FM Index MSc Jochen Singer David Weese, Knut Reinert SeqAn  
Multi-Split-Mapping of NGS reads MSc Kathrin Trappe Anne-Katrin Emde, Knut Reinert SeqAn  
Implementation of gapped seed suffix arrays and LAST MSc Sascha Meiers David Weese, Knut Reinert, Birte Kehr SeqAn  
Extending SeqAn::TCoffee for deep alignments MSc Oleg Yasnev Rahn, Knut Reinert SeqAn  
SIMD Extension of DP algorithms MSc Stefan Budach René Rahn, Knut Reinert SeqAn  
Bidirectional BWT and applications MSc Christopher Pockrandt Hauswedell, Knut Reinert SeqAn  

Research Project

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Topic revision: r107 - 20 Jul 2018, KnutReinert
 
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