Kontaktadresse:

Prof. Alexander Bockmayr

Ling Sun

Meeting time: date (dd.mm.yyyy); time, eg. 10 - 14, means we will start at 10:15.

Classroom: by default, we will meet in the computer room in Arnimallee 6, 017 / A6 (otherwise, it will be informed).

• Week - 13:
  • final presentation: Tuesday, 30.05.2017, 10 - 12, room SR 108/109 A6.

• Week - 12:
  • 13th meeting: Wednesday, 24.05.2017, 12 - 16, room SR 108/109 A6.

• Week - 11:
  • 12th meeting: Tuesday, 09.05.2017, 12 - 16.

• Week - 9:
  • 11th meeting: Tuesday, 25.04.2017, 10 - 14.

• Week - 8:
  • 10th meeting: Thursday, 20.04.2017, 10 - 14.

• Week - 7:
  • 9th meeting: Monday, 11.04.2017, 10 - 14.

• Week - 6:
  • 8th meeting: Friday, 07.04.2017, 10 - 13, Room SR 108/109 / A6.
  • 7th meeting: Monday, 04.04.2017, 10 - 14, Room 009 / A6.

• Week - 5:
  • 6th meeting: Monday, 27.03.2017, 10 - 14.
    • Programming tasks: Algorithms 1 ~ 4.

• Week - 4:
  • 5th meeting: Monday, 20.03.2017, 10 - 14.
    • Slides: RE_part_2.pdf
    • Exercise: programming tasks on RE algorithms.

• Week - 3:
  • 4th meeting: Tuesday, 14.03.2017, 11 - 15.
    • Slides: RE_part_1.pdf
    • Exercise: programming_tasks_w3w4.pdf
  • 3rd meeting: Monday, 13.03.2017, 10 - 14.

• Week - 2:
  • 2nd meeting: Monday, 06.03.2017, 12 - 14.
    • Slides: basics_discrete_modelling.pdf
    • Exercise: exercises_model_cond_ASTG_row.pdf

• Week - 1:
  • 1st meeting: Tuesday, 28.02.2017, at 10:30, Room 009 / A6.
    • Slides: Analysis_GRN_Project_introduction.pdf and Softwarepraktikum_Einfuehrung_Regulatorische_Netzwerke.pdf
    • Exercise: Exercise_2017_02_28.pdf Exercise_2017_02_28_sample.pdf

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All documents.

• Analysis_GRN_Project_introduction.pdf: Introduction of the software project "Analysis of gene regulatory networks".

• Softwarepraktikum_Einfuehrung_Regulatorische_Netzwerke.pdf: Slides of basics on discrete modelling of gene regulatory networks.

• Exercise_2017_02_28.pdf: Exercise for creating the ASTG from a given model.

• Exercise_2017_02_28_sample.pdf: An example on creating the ASTG from a given model.

• basics_discrete_modelling.pdf: Basic discrete modelling and row properties of the ASTG.

• exercises_model_cond_ASTG_row.pdf: Exercises on: model conditions, row properties in ASTGs, and a programming task.

• RE_part_1.pdf: Theories for the reverse engineering algorithm, part 1.

• programming_tasks_w3w4.pdf: Some programming tasks in week 3, 4, 5.