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1DLoadBalancingConceptualDraft
Parallelism In The SeqAn Library: 1D Load Balancing: Conceptual Draft Open issues * Providing N algorithm states to the forall method instead of just one intr...
r9 - 16 Sep 2010 - 19:15 by KonradRudolph
454genfusionen
Page 454genfusionen This page is a collection of ideas concerning 454 RNA sequencing data analysis. TODOs 25.3.: General Questions * which reference sequence ...
r2 - 26 Mar 2010 - 17:56 by AnneKatrinEmde
AlDaBiWS10
Page AlDaBiWS10 Willkommen im Wiki der Vorlesung "Algorithmen und Datenstrukturen für Bioinformatik" Nachrichten * 17.09.2010 (Reinert): Das Semester beginnt ...
r52 - 28 Mar 2011 - 13:05 by KonradRudolph
AlDaBiWS12
Page AlDaBiWS12 Willkommen im Wiki der Vorlesung "Algorithmen und Datenstrukturen für Bioinformatik" Nachrichten * 16.04.2013: Die Klausurergebnisse der 2. Kl...
r35 - 28 Feb 2014 - 09:36 by ReinertUserTopic
AlDaBiWS13Praktikum
AlDaBiWS13Praktikum Diese Seite behandelt das Praktikum zu Algorithmen und Datenstrukturen WS13 (hier geht es zur Vorlesungsseite). Übersicht Das Praktikum beste...
r31 - 04 Mar 2014 - 11:29 by mauli87
AssemblyComparison
Original goal: 1. Download the reads from a fairly well finished genome Human chr.21 2. and assemble it using two or more standard assemblers e.g. Cel...
r4 - 20 Jul 2010 - 01:28 by sabrina7
AssignmentWeek1
General information for programming exercises * Each group gets access to a svn directory at https://svn.mi.fu berlin.de/agbio/advancedAlgo/SS12/GroupX (Groups...
r8 - 30 Apr 2012 - 12:57 by SandroAndreotti
AssignmentWeek2
Sign up at ProgrammingGroupList for one of the exercises on Tuesday 15th and Wednesday 16th Exercise 2 Read mapping with QUASAR Deadline: 23.05.2012 9:00 a.m. Im...
r5 - 20 May 2012 - 16:21 by SandroAndreotti
AssignmentWeek3
Sign up at ProgrammingGroupList for one of the exercises on Tuesday 12th and Wednesday 14th Exercise 3 Compression with BWT Deadline: 24.06.2012 6:00 p.m. Implem...
r5 - 12 Jun 2012 - 12:13 by SandroAndreotti
BScParallelBamIO
BScParallelBamIO Implementation of parallel de /compression of BAM files. * Parallel Bam I/O Schedule/Report Background BAM 1 files are used for storing ali...
r5 - 21 Oct 2013 - 11:08 by holtgrew
BScReadRealignment
BScReadRealignment Comparing short read realignment algorithms. Background Read alignment is a crucial step for the analysis of Next Generation Sequencing (NGS) ...
NEW - 30 May 2013 - 22:53 by holtgrew
BoSSADraft
Page BoSSADraft This page describes the current draft of a Benchmark of Seeds for Sequence Analysis. Sources of inspiration are Rabema, PAPI and Pizza Chili Corpu...
r13 - 22 Jun 2011 - 15:30 by EnricoSiragusa
BowtieBwaComparison
Ich habe mir schon einmal ein paar Gedanken zu meinem Projekt gemacht und würde gerne einen Vergleich von bwa Burrows Wheeler Alignment Tool und dem Bowtie ans...
r9 - 16 Jul 2010 - 17:04 by SebastianThieme
BscImprovementsOfGraphBasedRealignment
BscImprovementsOfGraphBasedRealignment Improving the Graph Based Realignment in SeqAn. Background The SeqAn library contains a powerful method for realignment an...
r3 - 20 Jun 2013 - 10:19 by holtgrew
BscKmerBinCounting
Implementing and evaluating different strategies to assign the set of k mers in a NGS sample to genomic bins Background For metagenomics read mapping it becomes ...
NEW - 29 Nov 2017 - 12:01 by ReinertUserTopic
BscRawSeqJournaling
BscRawSeqJournaling BSc Thesis: Journaling raw sequences. Weekly Progress Introduction Nowadays sequencing technologies lead to a tremendous number of available...
r3 - 12 Feb 2015 - 19:05 by RmaerkerUserTopic
BscRegionFilter
BscRegionFilter Possible Project for a BSc Thesis in Bioinformatics or Computer Science Introduction "Many nucleotide and amino acid sequences are highly repetit...
r3 - 24 Oct 2017 - 15:59 by h4nn3s
BscSeqAn010Seeds
Implementing 01*0 seed search strategy using the bidirectional FM index in SeqAn Background Approximate string matching is an important subtask in many bioinform...
r3 - 25 Nov 2016 - 15:08 by cpockrandt
ChipSeq
ChIP Seq Motivanalyse Konzept Bei der ChIP Seq Analyse werden die genomweiten Bindungsstellen von Transkriptionsfaktoren dadurch identifiziert, dass man die Tran...
NEW - 29 Mar 2012 - 10:12 by KnutReinert
ChipSeqAnalysis
MSc Thesis #8211; Analysis of protein DNA interactions from ChIP seq data Remark This thesis will be a joint project of the Algorithmische Bioinformatik group a...
NEW - 06 Nov 2012 - 22:15 by SandroAndreotti
ChipSeqProfiles
Übersicht ChIP Seq ist eine Methode zur genomweiten Untersuchung von Protein DNA Interaktion 1 . Mit Hilfe von Antikörpern werden die Proteine von Interesse geme...
NEW - 20 Jun 2011 - 18:30 by KnutReinert
DCStaticLoadBalancing
Parallelism In The SeqAn Library: 1D Load Balancing: Conceptual Draft forall(AlgorithmState state, DataSpec spec) if spec is a leaf then process(state...
NEW - 14 Jul 2010 - 09:34 by KonradRudolph
DeepCoffee
Extending SeqAn::TCoffe for deep alignments Area Mulitple Sequence Alignment Topic tbd. Timeline References 1. Rausch, T, Sergey Koren, Gennady Denisov, Da...
NEW - 02 Oct 2014 - 22:09 by ReinertUserTopic
DfgWorkPackages
Page DfgWorkPackages This is the list of work packages from the DFG project. Design and verification of a suitable model for cross species genome compari son (...
NEW - 07 Jan 2010 - 09:03 by KnutReinert
Flexbar
Flexbar Flexbar (flexible barcode and adapter removal) ist eine Software für das Postprocessing von Next Generation Sequencing Reads. Sie Umfasst die Funktionen ...
r13 - 16 Sep 2013 - 14:43 by serosko
ForumSpace
Page ForumSpace Thsi page will be the discussion forum. Lecture 1 REINERT (30.4): Hier könnte eine ausgearbeitetere Version der Vorlesungsabfolge stehen. Oder ...
r34 - 02 Jun 2010 - 17:45 by DavidWeese
GenomeComparisonP4
Page GenomeComparisonP4 This is the project page of the Genome Comparison group. Students Mail an alle Gruppenmitglieder: AA2010SS GenComp bei lists.spline.de ...
r39 - 19 Jul 2010 - 18:50 by homilius
GuineaPigAnnotation
Timeline: * Week one: Preparation of the data (Matepairs, Illumina) for mapping, plus evaluation of the Matepair library quality. Choose suitable mapping program...
r2 - 23 Mar 2012 - 10:28 by KnutReinert
JournalClubWS11
Page JournalClubWS11 Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress reports fr...
r25 - 16 Jul 2012 - 11:20 by KnutReinert
KnimeSec
General info n this part of the Practical course sequence analysis you will be confronted with the situation of integrating several NGS analysis programs (which ...
r18 - 03 Jul 2013 - 09:54 by aiche
MCRazerToDo
MCRazerToDo 1 For Herrn Kleffe: * script to parallelize by reads with normal version * don't do all reads at a time: go over contig with some read ...
r11 - 17 Mar 2010 - 09:37 by mriese
May2011
Page May2011 Progress report Accomplishments in the last six months: General: * CNV detection in exome sequencing developed R/C HMM script for finding win...
NEW - 09 May 2011 - 09:39 by MikeLove
MethylationMapping
Multi Split Mapping of NGS reads for variant detection Student Sabrina Krakau Academic Advisor Prof. Dr. Knut Reinert, Anne Katrin Emde Expose The goal ...
r4 - 21 Feb 2012 - 13:50 by SabrinaKrakau
MultiReadAssignment
Solving the Multi read assignment problem Description This thesis should provide new ideas to solve the problem of multi read assignment for NGS data. Based on...
r7 - 06 Jul 2011 - 14:16 by lkuchenb
MultiReadAssignments
Page MultiReadAssignments This project will check the quality of mapper(s) concerning the multi reads assignment. Schedule * Generate random sequence OR get ...
r2 - 16 Jun 2010 - 14:42 by dangad
MultiSplitMappingNGS
Multi Split Mapping of NGS reads for variant detection Student Kathrin Trappe Academic Advisor Prof. Dr. Knut Reinert, Anne Katrin Emde Expose The goal ...
r14 - 02 May 2013 - 12:21 by KtrappeUserTopic
PMSB_Seqan_2010
Projektmanagement im Softwarebereich Seqan 2010 Das ist die vorläufige Wiki Seite zum Praktikum Projektmanagement im Softwarebereich Seqan. Aufteilung auf di...
r9 - 23 Mar 2011 - 09:25 by DavidWeese
PMSB_Seqan_2012
Projektmanagement im Softwarebereich SeqAn 2012 Das ist die vorläufige Wiki Seite zum Praktikum Projektmanagement im Softwarebereich SeqAn. Teilnehmer Name...
r28 - 25 May 2012 - 10:41 by JochenSinger
PMSB_Seqan_2014
Projektmanagement im Softwarebereich, SoSe 2014 (19588a und 19588b) * Einführung in Software Engineering am Freitag entfällt leider! Dies ist die Wiki Seite z...
r23 - 23 Apr 2014 - 08:58 by holtgrew
PSMB_Seqan_2013_BlastX
Page PSMB_Seqan_2013_BlastX Hintergrund: NGS Daten in Proteindatenbanken Next Generation Sequencing (NGS) Daten werden heute für unterschiedlichste Aufgaben verw...
r8 - 28 May 2013 - 17:48 by marjan
PSMB_Seqan_2013_NGS_Data_Cleansing
NGS Data Postprocessing Hintergrund Als Next Generation Sequencing (NGS) oder auch High Througput Sequencing (HTS) bezeichnet man Sequenzierverfahren, die in ver...
r2 - 12 Apr 2013 - 11:14 by lkuchenb
PSMB_Seqan_2013_NGS_Data_Cleansing_New
NGS Data Postprocessing Hintergrund Als Next Generation Sequencing (NGS) oder auch High Througput Sequencing (HTS) bezeichnet man Sequenzierverfahren, die in ver...
r2 - 12 Apr 2013 - 10:27 by lkuchenb
PSMB_Seqan_2013_NGS_Quality_Control_Details_Features
PSMB_Seqan_2013_NGS_Quality_Control_Details_Features Our application will read fastq files and collect statistical data about its content. The input itself will n...
r3 - 25 Apr 2013 - 12:00 by dkersting
PSMB_Seqan_2013_PEMer
Page PSMB_Seqan_2013_PEMer PEMer overview, Figure 1 from (Korbel et al., 2009). Hintergrund: Paired End Signaturen und Strukturvarianten Als Strukturvarianten be...
r7 - 07 May 2013 - 12:32 by zer
PSMB_Seqan_2014_SNP_caller
PSMB_Seqan_2014_SNP_caller Hintergrund Die häufigste und kleinste mögliche genomische Variation ist der Single Nucleotide Polymorphism. Nach dem Mapping von Read...
r8 - 10 Apr 2014 - 15:54 by sabrina7
PSMB_Seqan_2014_large_insertd
PSMB_Seqan_2014_large_insertd Hintergrund Lange Sequenzstücke, die im Donor aber nicht in der Referenz enthalten sind, lassen sich nur schwer mit einzelnen Reads...
r6 - 12 May 2014 - 08:59 by jobau
PSMB_Seqan_2014_mapper
PSMB_Seqan_2014_mapper Hintergrund Der erste Schritt ein einer Pipeline zur Analyse von Genomvarianten ist das Read Mapping. Dabei soll für jeden NGS Read eigent...
r5 - 21 Apr 2014 - 12:16 by RmaerkerUserTopic
PSMB_Seqan_2014_overview
PSMB_Seqan_2014_overview Im PSMB SeqAn 2014 geht es darum, eine einfach Pipeline zur Variantenanalyse aufzubauen. Hintergrund Insbesondere für das menschliche Ge...
NEW - 19 Mar 2014 - 11:19 by holtgrew
PSMB_Seqan_2014_small_indels
PSMB_Seqan_2014_small_indels Hintergrund Neben SNPs sind kleine Insertionen und Deletionen (indels) eine Klasse wichtiger genomischer Varianten. Für die Suche so...
r5 - 16 Apr 2014 - 14:39 by jsinger
PSMB_Seqan_2015_palign
PSMB_Seqan_2015_palign Einleitung Paarweise Sequenzalignments liefern wertvolle biologische Informationen über die Identität zweier Sequenzen. Entsprechend w...
NEW - 12 Mar 2015 - 18:01 by RmaerkerUserTopic
PSMB_Seqan_2016_p3
PSMB_Seqan_2016_p3 Hintergrund Der erste Schritt ein einer Pipeline zur Analyse von Genomvarianten ist das Read Mapping. Dabei soll für jeden NGS Read eigentlich...
r2 - 04 May 2016 - 13:52 by cpockrandt
PSMB_Seqan_2016_p5
Add BAM support to SeqAn SequenceFile In this project you will be asked to write an interface that will help the Sequence IO of SeqAn to seamlessly read SAM/BAM f...
r2 - 28 Jan 2016 - 17:35 by dadi
PSMB_Seqan_IBF
Auswertugn von Binning directories mit Hilfe von Interleaved Bloom filters Hintergrund: Filtern von NGS reads in bins In dem projekt soll (zufällig generierte) ...
r2 - 02 Feb 2018 - 09:43 by ReinertUserTopic
PSMB_Seqan_fft
Detection of homologous regions with FFT Given a set of sequences your task is to compute homologous segments for all pairs of the input set. The detection of hom...
r2 - 13 Feb 2018 - 16:00 by troja
ProgrammingExerciseOptiWS12
General information for programming exercises * We will continue working in the repository from the Algorithms lecture. To discriminate the exercise files we a...
r12 - 10 Dec 2013 - 14:35 by annikaroehl
ProgrammingExerciseOptiWS13
Short Overview The practical exercises for the lecture Optimization won't be programming exercises. Mostly you have to get familiar with an LP Solver, try to solv...
r11 - 17 Dec 2015 - 11:47 by annikaroehl
ProgrammingExercises
General information for programming exercises * Each group gets access to a svn directory at https://svn.imp.fu berlin.de/agbio/AlgorithmsWS12/GroupX (Enter yo...
r39 - 06 Dec 2012 - 14:27 by SandroAndreotti
ProgrammingExercisesWS13
General information for programming exercises * Each group gets access to a svn directory at https://svn.imp.fu berlin.de/agbio/AlgorithmsWS13/GroupX * The...
r9 - 17 Nov 2013 - 16:31 by AndreottUserTopic
ProgressAndreotti2010
Progress report Sandro Andreotti fall 2010 Work performed last 6 months * Several programming tasks were performed for the major revision of the ANTILOPE ...
r2 - 02 Dec 2010 - 18:33 by SandroAndreotti
ProgressReportEmde-04-2010
Page ProgressReportEmde 04 2010 Progress report Accomplishments in the last six months: General: * Read many papers on variant detection, notes taken here. ...
r2 - 15 Apr 2010 - 13:30 by KnutReinert
ProgressReportEmde-05-2011
Page ProgressReportEmde 05 2011 Progress Report (under construction) Accomplishments in the last six months: SplazerS: * redid single end read simulation (co...
r5 - 31 May 2011 - 17:02 by KnutReinert
ProgressReportEmde-10-2010
Page ProgressReportEmde 10 2010 Progress Report Accomplishments in the last six months: Split read mapping: * Finished implementation of splitRazers, poster...
r6 - 18 May 2011 - 12:01 by AnneKatrinEmde
QualityTrim
//
================================================================ // quality_trimmer // ===================================...r2 - 12 Jun 2013 - 09:24 by jsinger
Razers2Revision
Page Razers2Revision General Points TODO: Wait for evaluation of Hobbes on human, execute class, update tables. Manuel : Section S5 was updated to reflect the u...
r33 - 03 Jul 2012 - 09:26 by KnutReinert
ReadLengthSplicing
Mich hat es interessiert zu wissen wie viele exons wir tatsächlich verlieren, wenn wir nicht auf die spliced reads achten würden. Bzw wie sich diese verteilung än...
r11 - 02 Sep 2010 - 04:56 by balcazar
ReadMapper
Devising read mapping strategies in KNIME Area Read mapping quality, Mappability, KNIME Topic The main goal of this thesis is to devise strategies to compute a)...
r5 - 26 Aug 2013 - 12:07 by kys
RepeatMasking
Repeat Masking Repeats in DNA Sequenzen sind ein häufig beobachtetes Phänomen. Insbesondere in den ersten Schritten der Genome Analyse verursachen sie Probleme, d...
r5 - 13 Apr 2012 - 15:11 by JochenSinger
RnaSeqMSplazers
PISB SeqAn Projekt RNA Seq: Mapping von RNA reads mit MSplazer Hintergrund: Mapping von RNA reads Im Gegensatz zum Whole Genome Sequencing, wo ein kompletter...
r2 - 18 Apr 2012 - 16:40 by KathrinTrappe
RnaSeqP4
Page RnaSeqP4 This is the project page of the RNA Seq group. Students Mail an alle Gruppenmitglieder: AA2010SS RNASeq bei lists.spline.de Name email Cori...
r51 - 22 Jul 2010 - 16:30 by cblasse
RnaSeqReadSimulator
PISB SeqAn RNA Seq Read Simulator Hintergrund: RNA Seq Simulation Simulierte Daten leisten wichtige Dienste bei der Entwicklung, Fehlersuche und Bewertung von ...
r2 - 12 Apr 2012 - 14:07 by ManuelHoltgrewe
SeqAn
General info n this part of the Practical course sequence analysis you will be confronted with the situation of prototyping NGS analysis programs with an availab...
r8 - 12 Jun 2013 - 12:06 by jsinger
SimpleBowtie
Simple Bowtie Bowtie ist ein "ultrafast and memory efficient" Read Mapper 1 der auf der Burrows Wheeler Transformation (BWT) basiert. Die BWT eines Textes T ist...
r4 - 30 Mar 2012 - 13:32 by KnutReinert
SnippetsAnneKatrin
Page SnippetsAnneKatrin This is where I write my weekly goals. all time todos: * make splitRazers project page * add link in seqanswers forum srp thread ...
r34 - 07 Dec 2010 - 13:43 by AnneKatrinEmde
SnpStore
Page SnpStore Short overview of SnpStore implementation. General structure Here is a general pseduocode like outline of how SnpStore proceeds. The functionality...
r3 - 25 Sep 2012 - 14:02 by AnneKatrinEmde
SpecificationsAR
Write a SeqAn program that: * reads in....
NEW - 30 May 2013 - 10:48 by ReinertUserTopic
StructuralAndCopyNumberVariationV1
Page StructuralAndCopyNumberVariationV1 Method using read depth from genome resequencing without case/control pairs. Implemented in pipeline at MPI MG for Stefan ...
NEW - 09 May 2011 - 09:36 by MikeLove
ThesesHome
Theses Page OUTDATED! Go to: https://kvv.imp.fu berlin.de/x/8RK4cp Available topics * If you are interested in doing your thesis in algorithmic bioinformatic...
r108 - 23 Sep 2019 - 11:22 by KasseckeUserTopic
ThesisAnnoAlign
Page ThesisAnnoAlign Brief overview Next generation sequencing methods have given rise to a whole new set of algorithmic problems. Using the principles of huge a...
r3 - 16 Nov 2009 - 18:06 by mheuser
ThesisAnnoAlignReports
Page ThesisAnnoAlignReports Back to ThesisAnnoAlign. Week 0 (21.10.2009 25.10.2009) * First meeting with David and Marcel * Recieved topic and short i...
r6 - 20 Jan 2010 - 00:44 by maheuser
ThesisCNVs
Page ThesisCNVs Detektion von Copy Number Variationen in Sequenzierdaten $ Student: Kerstin Neubert $ Betreuer: Anne Katrin Emde, Prof. Dr. Knut Reinert Z...
r20 - 30 Jul 2010 - 00:35 by NeubertkUserTopic
ThesisGPGPUSeqan
Page ThesisGPGPUSeqan Myers Bit Vector Algorithm on GPU for Seqan Massiv parallelization of Myers Fast Bit Vector Algorithm for Approximate String Matchinsg us...
r28 - 22 Mar 2011 - 22:35 by llangner
ThesisMCRazer
ThesisMCRazer Check, whether abstract, description, and literature are in CMS Parallelization of RazerS $ Student: Martin Riese $ Academic Advisor: David W...
r4 - 03 Feb 2010 - 09:03 by mriese
ThesisMCRazerMcSpeedDifferentNumberOfCores
Page ThesisMCRazerMcSpeedDifferentNumberOfCores * Auf Tanne * Reference: chr22.fa * Reads: SRR006387.fastq_1.00000 (100,000) cores real time *cp...
NEW - 22 Mar 2010 - 22:38 by mriese
ThesisMCRazerMcWindowBlock
Page ThesisMCRazerMcWindowBlock * Auf Tanne * Reference: chr22.fa * Reads: SRR006387.fastq_1.00000 * Used real part of time out put due to the lack of...
r2 - 17 Mar 2010 - 17:24 by mriese
ThesisMCRazerParallelOptions
Page ThesisMCRazerParallelOptions Option Details and Options Pro Contra TBB? Parallelize by Genome /RazerS Piktogram Parallel by G...
r3 - 14 Feb 2010 - 20:21 by mriese
ThesisMCRazerQgrams
Page ThesisMCRazerQgrams * 5 Millionen Reads von Yuruba auf Chromosom 22 (ca. 2x35Mb) * id i 98 nc 8 bt 1 ws 50000 * razerMC 1.3 * Matches beinha...
r6 - 15 Apr 2010 - 16:05 by mriese
ThesisMCRazerResults
Page ThesisMCRazerResults * Open addressing * speed test * size * higher Q's * speed test 1 * window * parallel by reads * spe...
r5 - 29 Mar 2010 - 08:58 by mriese
ThesisMCRazerSizeOA
Page ThesisMCRazerSizeOA * 7,000,000 reads * Yoruba * q length sa length dir size normal (Mb) size open addressing (Mb) * 11 626700240 99374...
NEW - 29 Mar 2010 - 09:00 by mriese
ThesisMCRazerSpeedOA
Page ThesisMCRazerSpeedOA what was the used q here? Can you make for a first estimate q =10, q=14, q=22 (f course only in open adressing?) Next question would be,...
r7 - 14 Mar 2010 - 19:18 by mriese
ThesisMCRazerVersions
Page ThesisMCRazerVersions Version of Parallel RazerS: Number Revision Remarks 1.0 5414 With smaller critical reagion, Option to set the number of t...
r7 - 19 Jun 2010 - 21:57 by mriese
ThesisMCRazerWeeklyReports
Page ThesisMCRazerWeeklyReports Week 1 (25.1.) * Q gram index with open hashing Week 2 (1.2.) * Adapt mapRead functions to parallelism * Overview over ...
r13 - 22 Mar 2010 - 22:39 by mriese
ThesisMCRazerWorkPlan
ThesisMCRazerWorkPlan * Implementieren des Open hashing Q gram index * Paralleles filtern der Referenz in über kürzere Abschnitte dann parallel verifizieren (...
r3 - 26 Jan 2010 - 20:03 by mriese
ThesisNGSOverlap
Overlap Module for NGS Pipeline Summary The overlap module merges the information retained by read mapping to a genome with annotation information (for example g...
r4 - 16 Aug 2009 - 21:30 by krakau
ThesisParallelismInSeqanWeeklyReports
Parallelism In The SeqAn Library: #8220;Weekly #8221; Reports Weekly reports about ThesisParallelismInSeqan. General * 05/08 #8211;05/11: * Work on pre...
r26 - 29 Nov 2010 - 10:05 by KonradRudolph
VariantDetectionAppliedPapers
Page VariantDetectionAppliedPapers Collection of applied variant detection papers, with comments. Applied Papers Genome wide mapping and assembly of structural ...
NEW - 07 Dec 2010 - 22:35 by AnneKatrinEmde
VariantDetectionPapers
Page VariantDetectionPapers Remarks to papers concerning variant detection in NGS data. Method Papers Simple variation VarScan: variant detection in massively ...
r20 - 18 May 2011 - 13:11 by AnneKatrinEmde
ViralIntegration
The data for this project comes from the company febit. The goal is to: 1. Develop a local read mapper for color spaced reads. 2. To apply it to find viral ...
r12 - 18 Jul 2010 - 12:29 by cblasse
WholeTranscriptomeAnalysis
MSc Thesis Whole transcriptome and miRNome analysis from next generation sequencing data Remark This thesis will be a joint project of the Algorithmische Bioin...
NEW - 06 Nov 2012 - 22:09 by SandroAndreotti
Worklog_Hauswedell
Page Worklog_Hauswedell Project Work log Hauswedell Friday, 25.06.2010: * second "real" meeting with Thieme to do planning and division of work * got access...
r4 - 06 Jul 2010 - 19:16 by h4nn3s
Number of topics: 99
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