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AssignmentWeek1
General information for programming exercises * Each group gets access to a svn directory at https://svn.mi.fu berlin.de/agbio/advancedAlgo/SS12/GroupX (Groups...
r8 - 30 Apr 2012 - 12:57 by SandroAndreotti
AssignmentWeek2
Sign up at ProgrammingGroupList for one of the exercises on Tuesday 15th and Wednesday 16th Exercise 2 Read mapping with QUASAR Deadline: 23.05.2012 9:00 a.m. Im...
r5 - 20 May 2012 - 16:21 by SandroAndreotti
BScReadRealignment
BScReadRealignment Comparing short read realignment algorithms. Background Read alignment is a crucial step for the analysis of Next Generation Sequencing (NGS) ...
NEW - 30 May 2013 - 22:53 by holtgrew
BowtieBwaComparison
Ich habe mir schon einmal ein paar Gedanken zu meinem Projekt gemacht und würde gerne einen Vergleich von bwa Burrows Wheeler Alignment Tool und dem Bowtie ans...
r9 - 16 Jul 2010 - 17:04 by SebastianThieme
DfgWorkPackages
Page DfgWorkPackages This is the list of work packages from the DFG project. Design and verification of a suitable model for cross species genome compari son (...
NEW - 07 Jan 2010 - 09:03 by KnutReinert
DraftS
Drafts * Rabema * RazerS2 * RazerS2Revision * Read Mapper Benchmarks * Fiona * Stellar * SearchJoin
r8 - 23 Jan 2013 - 11:23 by EnricoSiragusa
JournalClubSS11
Page JournalClubSS11 Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress reports fr...
r16 - 15 Jul 2011 - 17:31 by DavidWeese
KnimeSec
General info n this part of the Practical course sequence analysis you will be confronted with the situation of integrating several NGS analysis programs (which ...
r18 - 03 Jul 2013 - 09:54 by aiche
PMSB_Seqan_2010
Projektmanagement im Softwarebereich Seqan 2010 Das ist die vorläufige Wiki Seite zum Praktikum Projektmanagement im Softwarebereich Seqan. Aufteilung auf di...
r9 - 23 Mar 2011 - 09:25 by DavidWeese
PMSB_Seqan_2014
Projektmanagement im Softwarebereich, SoSe 2014 (19588a und 19588b) * Einführung in Software Engineering am Freitag entfällt leider! Dies ist die Wiki Seite z...
r23 - 23 Apr 2014 - 08:58 by holtgrew
PMSB_Seqan_2016
Projektmanagement im Softwarebereich, SoSe 2016 (19401511 (S) und 19401513 (P)) Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" S...
r18 - 11 Apr 2016 - 15:30 by h4nn3s
PMSB_Seqan_2017
Projektmanagement im Softwarebereich, SoSe 2017 (19401511 (S) und 19401513 (P)) Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" S...
r2 - 27 Jan 2017 - 11:45 by h4nn3s
PSMB_Seqan_2014_SNP_caller
PSMB_Seqan_2014_SNP_caller Hintergrund Die häufigste und kleinste mögliche genomische Variation ist der Single Nucleotide Polymorphism. Nach dem Mapping von Read...
r8 - 10 Apr 2014 - 15:54 by sabrina7
PSMB_Seqan_2014_large_insertd
PSMB_Seqan_2014_large_insertd Hintergrund Lange Sequenzstücke, die im Donor aber nicht in der Referenz enthalten sind, lassen sich nur schwer mit einzelnen Reads...
r6 - 12 May 2014 - 08:59 by jobau
PSMB_Seqan_2014_mapper
PSMB_Seqan_2014_mapper Hintergrund Der erste Schritt ein einer Pipeline zur Analyse von Genomvarianten ist das Read Mapping. Dabei soll für jeden NGS Read eigent...
r5 - 21 Apr 2014 - 12:16 by RmaerkerUserTopic
PSMB_Seqan_2014_small_indels
PSMB_Seqan_2014_small_indels Hintergrund Neben SNPs sind kleine Insertionen und Deletionen (indels) eine Klasse wichtiger genomischer Varianten. Für die Suche so...
r5 - 16 Apr 2014 - 14:39 by jsinger
PSMB_Seqan_2016_p3
PSMB_Seqan_2016_p3 Hintergrund Der erste Schritt ein einer Pipeline zur Analyse von Genomvarianten ist das Read Mapping. Dabei soll für jeden NGS Read eigentlich...
r2 - 04 May 2016 - 13:52 by cpockrandt
QualityTrim
//
================================================================ // quality_trimmer // ===================================...r2 - 12 Jun 2013 - 09:24 by jsinger
Razers2Revision
Page Razers2Revision General Points TODO: Wait for evaluation of Hobbes on human, execute class, update tables. Manuel : Section S5 was updated to reflect the u...
r33 - 03 Jul 2012 - 09:26 by KnutReinert
ReadLengthSplicing
Mich hat es interessiert zu wissen wie viele exons wir tatsächlich verlieren, wenn wir nicht auf die spliced reads achten würden. Bzw wie sich diese verteilung än...
r11 - 02 Sep 2010 - 04:56 by balcazar
RnaSeqP4
Page RnaSeqP4 This is the project page of the RNA Seq group. Students Mail an alle Gruppenmitglieder: AA2010SS RNASeq bei lists.spline.de Name email Cori...
r51 - 22 Jul 2010 - 16:30 by cblasse
SeqAn
General info n this part of the Practical course sequence analysis you will be confronted with the situation of prototyping NGS analysis programs with an availab...
r8 - 12 Jun 2013 - 12:06 by jsinger
SimpleBowtie
Simple Bowtie Bowtie ist ein "ultrafast and memory efficient" Read Mapper 1 der auf der Burrows Wheeler Transformation (BWT) basiert. Die BWT eines Textes T ist...
r4 - 30 Mar 2012 - 13:32 by KnutReinert
ThesesHome
Theses Page OUTDATED! Go to: https://kvv.imp.fu berlin.de/x/8RK4cp Available topics * If you are interested in doing your thesis in algorithmic bioinformatic...
r108 - 23 Sep 2019 - 11:22 by KasseckeUserTopic
ThesisAnnoAlign
Page ThesisAnnoAlign Brief overview Next generation sequencing methods have given rise to a whole new set of algorithmic problems. Using the principles of huge a...
r3 - 16 Nov 2009 - 18:06 by mheuser
ThesisMCRazerWeeklyReports
Page ThesisMCRazerWeeklyReports Week 1 (25.1.) * Q gram index with open hashing Week 2 (1.2.) * Adapt mapRead functions to parallelism * Overview over ...
r13 - 22 Mar 2010 - 22:39 by mriese
ViralIntegration
The data for this project comes from the company febit. The goal is to: 1. Develop a local read mapper for color spaced reads. 2. To apply it to find viral ...
r12 - 18 Jul 2010 - 12:29 by cblasse
WebStatistics
Statistics for ABI Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads: ...
r813 - 05 Dec 2025 - 04:03 by AdminUser
Number of topics: 28
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