Page QuantProtP4_Fingerprint

Project Planning for QuantProtP4 - Mass fingerprinting

(1) Digestion of protein sequences

- Naive tryptic digestion (split after every K,R - consider c-terminal P)

- Proteolytic incomplete digestion - with a certain percentage, not every fragment is digested at K or R

(- Tryptic digestion of K,R and only modified C's) missing references for digestion of C, hence it was excluded

(implemented)

(2) Post-translational modifications

- Some modifications taken from unimod.org were used for post-translational modifications

(implemented)

(3) Comparison of feature mass and quality values with theoretical mass and their distance

(implemented)

(4) Mass decimal plot

(implemented)

Comments

why split after "C"?

-- ChrisBielow - 16 Jun 2010

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