Genomics (WiSe 2014)

Welcome to the Wiki of the MSc lecture Genomics (CUB848/CUB849).

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General Information

SWS: 2+2 ECTS: Lecturer: Peter Robinson, Charité Berlin Exercises: (...) Language: English

Requirements for Aktive Teilnahme

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Times and Dates

Event	Day	Time	Address	Room
Lecture (CUB848)	Tue	14-16	Arnimallee 6	SR 007/008
Exercise (CUB849)	Thu	08-10	Takustr. 9	SR 006

Schedule (alt / 2013)

Date	Lecture	Lecturer
15.10.-26.11.	Algorithms for approximate string search in NGS data and applications
15.10.2013	Lecture 1: NGS technologies	Robinson
22.10.2013	Lecture 2: Read mapping considerations	Reinert
29.10.2013	Lecture 3: Myers bitvector edit distance algorithm	Weese
05.11.2013	Lecture 4: Hierarchical pigeonhole filter	Weese
12.11.2013	Lecture 5: Variant Calling and Annotation I	Robinson
19.11.2013	Lecture 6: Index based methods and the BWT	Reinert
26.11.2013	Lecture 7: Variant Calling and Annotation II	Robinson
28.11.2013	Review 1 (during exercises)
03.12.-14.01.	Computing genetic variations
03.12.2013	Lecture 8: Problems in metagenome analysis	Reinert/Singer
10.12.2013	Lecture 9: Variant Calling and Annotation II	Robinson
17.12.2013	Lecture 10: Structural Variants I	Robinson
07.01.2014	Lecture 11: Structural Variants II	Robinson
14.01.2014	Review 2 (during exercises)
.??.??-??.??.	Quantitative NGS analysis
14.01.2014	Lecture 12: RNA-seq I	Robinson
21.01.2014	Lecture 13: RNA-seq II	Robinson
28.01.2014	Lecture 14: ChIP-seq I	Robinson
04.02.2014	Lecture 15: ChIP-Seq II	Robinson
11.02.2014	Exam

Exercises (alt / WiSe 2013)

Discussed at	Excerise
31.10.2013	Exercise 2 / Exercise 2 Solutions
07.11.2013	Exercise 3
14.11.2013	Exercise 4
28.11.2013	Exercise 5
05.12.2013	Exercise 6
12.12.2013	Exercise 7
09.01.2014	Exercise 8

Exam results

last 4 digits Matrikelnummer	points	mark

Reviews

You need to reach 50% of all points of the two reviews.

Review 1

last 4 digits Matrikelnummer	points	percent

Review 2

last 4 digits Matrikelnummer	points	percent