Page CompMethodsWS11

In this seminar, we will focus on two different kinds of high-throughput technologies:
  • second-generation DNA sequencing
  • liquid chromatography / mass spectrometry.

Written Summary

  • Prepare a 2-3 page summary of your article and send it to us as pdf.
  • Make sure you send it before Feb 29, 23:59 CET. We will not accept any summaries after Feb 29.
  • The written summary will account for 30% of the entire grade.

Alternative Projects

Those of you who have received alternative projects to compensate for attendance issues, are asked to send their reports before Feb 29, 23:59 CET. We will not accept any reports after Feb 29.

Talk Preparation

IMPORTANT:
  • Please make an appointment with us about 4 weeks (at least 2 weeks)
prior to your talk, so we can discuss the focus of the talk and you can start preparing.

  • Make another appointment/date about 1.5 weeks prior to your talk
(latest on monday before your talk) where you either - send the COMPLETE slides and audience questions (5-10) via mail - or come to us and present your slides and audience questions (5-10). The latter is recommended, as we can iron out small mistakes much more effectively.

  • Prepare the talk for ~50-60 minutes. See the guidelines below for good
talks (or start googling yourself - but remember: not everything on YouTube is true).

Talk schedule

Location, location, location

  • Takustr.9 , room 005

Time

  • saturdays: 10 am - 4 pm
  • sundays: 12 am - 6 pm

Talks

name topic date paper url slides
Andreas Eckart RazerS 12/03/2011 http://genome.cshlp.org/content/19/9/1646.full
Christopher Ozdoba AGE - BreakPoint DP 12/03/2011 http://bioinformatics.oxfordjournals.org/content/27/5/595.short
Matt Huska GSNAP 12/03/2011 http://bioinformatics.oxfordjournals.org/content/26/7/873.short MHuska_GSNAP.pdf
Yvonne Mayer SRiC 12/04/2011 http://www.biomedcentral.com/1471-2164/12/375/abstract
Jörgen Brandt Isobar - iTRAQ 12/04/2011 http://www.ncbi.nlm.nih.gov/pubmed/21526793
Jan M. Josten SRMA 12/04/2011 http://genomebiology.com/2010/11/10/R99/
Mathias Kuhring InsPecT 01/21/2012 http://pubs.acs.org/doi/abs/10.1021/ac050102d
Anke Penzlin ETISEQ 01/21/2012 http://www.ncbi.nlm.nih.gov/pubmed/19664259
Oliver Stolpe StructuralVariant Framework 01/21/2012 http://bioinformatics.oxfordjournals.org/content/24/13/i59.short
Sabrina Krakau Variation Hunter 01/22/2012 http://genome.cshlp.org/content/19/7/1270.full
Martin Wettig BreakSeq 01/22/2012 http://www.nature.com/nbt/journal/v28/n1/full/nbt.1600.html
Jörn Bethune CancerSequencing & ChimeraScan 01/22/2012 http://www.nature.com/nature/journal/v458/n7234/full/nature07638.html and http://bioinformatics.oxfordjournals.org/content/27/20/2903.short

Material

Introduction slides:
  • see attachment table below

Relevant review papers:

Presentation templates:

Two useful guides on how to give a good seminar talk:

Comments

An welchem Ort findet das ganze statt? Im gleichen Raum im Pi-Gebäude wie bisher?

-- Main.jbethune - 02 Dec 2011
 

Topic attachments
I Attachment Action Size Date Who Comment
Intro2_Genomics.pdfpdf Intro2_Genomics.pdf manage 1470.2 K 18 Nov 2011 - 11:39 AnneKatrinEmde  
Intro2_MS.pdfpdf Intro2_MS.pdf manage 726.4 K 25 Oct 2011 - 14:33 ChrisBielow  
Intro_Genomics.pdfpdf Intro_Genomics.pdf manage 1706.5 K 18 Oct 2011 - 14:30 ChrisBielow Genomics Introduction
Intro_MS.pdfpdf Intro_MS.pdf manage 885.8 K 18 Oct 2011 - 14:29 ChrisBielow General Information & MS Introduction
MHuska_GSNAP.pdfpdf MHuska_GSNAP.pdf manage 6326.9 K 05 Dec 2011 - 21:27 ChrisBielow Talk by Matt Huska on GSNAP
Topic revision: r17 - 24 Feb 2012, ChrisBielow
 
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