Projects

de.NBI - CIBI

Knut Reinert

Progress in medicine and life sciences becomes more and more dependent on complex workflows for data analysis. The immensely increasing amount of data that scientists are faced with demands a continuous improvement in these workflows as well as efficient algorithms and tools. CIBI maintains the ...

Ess-B.A.R.

Prof. Knut Reinert

Im Verbundprojekt Ess-B.A.R. werden konkrete Lösungsansätze erarbeitet, die zu einer Verbesserung des Schutzes der Gesellschaft bei außergewöhnlichen biologischen Gefahrenlagen beitragen. Dies geschieht im Rahmen eines anwendungsorientierten Forschungsvorhabens in interdisziplinärer ...

lncRNA-finding

Prof. Knut Reinert, Prof. Annalisa Marsico

Non-coding RNAs (ncRNAs), transcripts that do not code for proteins, started receiving a lot of attention in the last decade, thanks to several high-throughput genome-wide sequencing efforts which showed that, whereas less than 2% of the genome encodes proteins, at least 75% is actively transcribed ...

SeqAn IPCC

Prof. Knut Reinert

The analysis of sequencing data is demanding because of the enormous data volume and the need for fast turnaround time, accuracy, reproducibility, and data security. This requires a large variety of expertise: Algorithm design, strong implementation skills for analyzing big data on standard ...

OpenMS

Knut Reinert

      OpenMS - A C++ library for MS based Proteomics analysis The OpenMS library is intended to provide a flexible framework for the differential analysis of HPLC/MS data. OpenMS offers algorithms for peak picking, protein ID, labeled and label-free quantitation. OpenMS has been and is being ...

SeqAn

Knut Reinert

    A C++ library for biological sequence analysis SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, ...