Progress report Stephan Aiche fall 2010

OpenMS

• generic labeling framework for MSSimulator is finished
• OpenMS 1.7 released
• parallel implementation of RawSignal Simulation in MSSimulator

Protease Kinetics

• implemented adapter for http://www.zib.de/de/numerik/csb/projekte/projektdetails/article/poem.html POEM
• tested POEM for parameter estimation; very promising resutlts
• implemented WORKER (proteomics.net) for all mayor steps in the workflow

Plans for upcoming 6 month

• write Simulator Paper
• large scale testing (using WORKERS) of kinetics ideas
• write protease kinetics paper
• write outline for dissertation

Outstanding Tasks

• porting protease kinetics ideas to OpenMS (e.g. TOPP tool or external project)

Deferred Projects

• implement non-tryptic identification for Schlüter Lab (maybe paper)
• possibly write part of LabelFree Quant Paper with Hendrik

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