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SIMDDpAlgo in ABI
SIMDDpAlgo SIMD extension of the standard DP algorithms in SeqAn Introduction Newer processors are shipped with 16 registers having an extended width of 128 bit …
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture10Materials in ABI
Here is all the material for the lecture 10 * Download the script
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture11Materials in ABI
Here is all the material for the lecture 11 * Download the script
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture12Materials in ABI
The lecture on Thursday 4.7.2013 will start 10:30 Here is all the material for the lecture 9 * Download the script
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture13Materials in ABI
Here is all the material for the lecture 11 * Download the script
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture1Materials in ABI
Here is all the material for the lecture 1 * Download the script.pdf
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture2Materials in ABI
Here is all the material for the lecture 1 * See lecture 1
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture3Materials in ABI
Here is all the material for the lecture 3 * Download the script.pdf * Watch a previous lecture as a video lower res or high res
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture4Materials in ABI
Here is all the material for the lecture 4 * Download the script * exercise_4.pdf
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture5Materials in ABI
Here is all the material for the lecture 5 and 6 * Download the script
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture6Materials in ABI
Here is all the material for the lecture 6 * Download the script
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture7Materials in ABI
Here is all the material for the lecture 6 * Download the script
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture8Materials in ABI
Here is all the material for the lecture 6 * See last script
09 Aug 2023 - 17:03, UnknownUser
SS13Lecture9Materials in ABI
Here is all the material for the lecture 9 * Download the script
09 Aug 2023 - 17:03, UnknownUser
SS14Lecture11Materials in ABI
Here is all the material for the lecture 7 and 8 * Download the script:
09 Aug 2023 - 17:03, UnknownUser
SS15Lecture10Materials in ABI
Here is all the material for the lecture 12 * Download the script
09 Aug 2023 - 17:03, UnknownUser
SS15Lecture9Materials in ABI
Here is all the material for the lecture 12 * Download the script
09 Aug 2023 - 17:03, UnknownUser
Scan in ABI
Page Scan Scanning scanning scanning… How to scan * Using Network ScanGear Software * Install the scanner driver by following the instructions in the …
09 Aug 2023 - 17:03, UnknownUser
SearchJoinTodo in ABI
Page SearchJoinTodo ((short description what this page is about)) TODO * Put FileReader/FileWriter into extras DONE * Optimize global Myers DONE * B…
09 Aug 2023 - 17:03, UnknownUser
SeedDesign in ABI
Page SeedDesign This page contains an essay on the state of the art of seed design. The goal of this essay is to give an unifying view on seed design. Most releva…
09 Aug 2023 - 17:03, UnknownUser
SeedingStrategies in ABI
Implementation and evaluation of index based seeding strategies in SeqAn Area Substring Indices, read mapping, local alignment, q mer indices Topic The goal of …
09 Aug 2023 - 17:03, UnknownUser
SegementAligner in ABI
PISB SeqAn Teilprojekte Segment Aligner Hintergrund: Hierarchisches Genomalignment Um das Alignment ganzer Genome zu ermöglichen, werden in der Regel zunächst …
09 Aug 2023 - 17:03, UnknownUser
SeqAn in ABI
General info n this part of the Practical course sequence analysis you will be confronted with the situation of prototyping NGS analysis programs with an availab…
09 Aug 2023 - 17:03, UnknownUser
SeqAnRetreat2010 in ABI
Information about the SeqAn retreat Please keep checking for updates! Schedule The meeting begins on Monday, 04 Oct 2010 at 10 a.m. and ends on Friday, 08 Oct 20…
09 Aug 2023 - 17:03, UnknownUser
SeqAnRetreat2011 in ABI
Information about the SeqAn workshop 2011 The SeqAn BioStore website is up. Please find information here.
09 Aug 2023 - 17:03, UnknownUser
SeqAnRetreat2012 in ABI
Guidelines for the Organization of Meetings Technical Factors * find/reserve a room SeqAn Retreat March 2012 with Illumina: T9/053 * look into technical…
09 Aug 2023 - 17:03, UnknownUser
SeqAnRetreatInternal in ABI
Page SeqAnRetreatInternal Confirmed Participants Social Event Options Fernsehturm …
09 Aug 2023 - 17:03, UnknownUser
SequenceAlignment in ABI
Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Der letzte Abschnitt,
09 Aug 2023 - 17:03, UnknownUser
SequenceAlignmentWS11 in ABI
Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: alignment.pdf Übungen: Inhalt Datei Material 4. Übung A4.pdf 5. Übung …
09 Aug 2023 - 17:03, UnknownUser
SequenceAlignmentWS12 in ABI
Page SequenceAlignmentWS12 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: * alignment.pdf Videos: * Vorlesungsvideo Alignment1 …
09 Aug 2023 - 17:03, UnknownUser
SequenceAlignmentWS13 in ABI
Page SequenceAlignmentWS13 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: * alignment.pdf Videos: * Vorlesungsvideo Alignment1 …
09 Aug 2023 - 17:03, UnknownUser
SequenceAlignmentWS14 in ABI
Page SequenceAlignmentWS14 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: * alignment.pdf Videos: Video 3 ist defekt. Hier das Vorlesu…
09 Aug 2023 - 17:03, UnknownUser
Sequence_analysi_2013 in ABI
Sequence Analysis SS 2013 Welcome to the Wiki of the Lecture Sequence Analysis. This module consists of 2 hours lecture, 2 hours exercise and 2 hours seminar. The…
09 Aug 2023 - 17:03, UnknownUser
Sequence_analysis_2013 in ABI
THIS IS STILL OLD Times and rooms Rooms and timings Event Day Time Address Room Lecture Tue 10 12 Takustr. 9 005 Lecture Thu …
09 Aug 2023 - 17:03, UnknownUser
Sequence_analysis_2014 in ABI
Sequence Analysis, SoSe 2014 (LV Nr. 19716, 19716a, 19716b) Welcome to the Wiki of Sequence Analysis. This module consists of 2 hours lecture, 2 hours exercis…
09 Aug 2023 - 17:03, UnknownUser
Sequence_analysis_2015 in ABI
Sequence Analysis, SoSe 2015 (LV Nr. 19401601 (V), 19401602 (Ü), 19401611 (S)) Welcome to the Wiki of Sequence Analysis. This module consists of 2 hours lectu…
09 Aug 2023 - 17:03, UnknownUser
Sequence_analysis_2016 in ABI
Sequence Analysis, SoSe 2016 *(LV Nr. 19401601 (V), 19401602 (Ü), 19401611 (S)) Welcome to the Wiki of Sequence Analysis. Dear Students. We will use for the lec…
09 Aug 2023 - 17:03, UnknownUser
ShortPaperPresentations in ABI
Page ShortPaperPresentations Groups and papers List of groups together with the papers to be presented during the lecture on January 18. Details are presented on…
09 Aug 2023 - 17:03, UnknownUser
SimpleBowtie in ABI
Simple Bowtie Bowtie ist ein
09 Aug 2023 - 17:03, UnknownUser
SlaganSupermap in ABI
SLAGAN Input: two genomic dna sequences in FASTA file(s) Generation of local alignments (Svenja) SLAGAN uses the CHAOS aligner for this phase: * finding seeds…
09 Aug 2023 - 17:03, UnknownUser
SnippetsAnneKatrin in ABI
Page SnippetsAnneKatrin This is where I write my weekly goals. all time todos: * make splitRazers project page * add link in seqanswers forum srp thread …
09 Aug 2023 - 17:03, UnknownUser
SnpStore in ABI
Page SnpStore Short overview of SnpStore implementation. General structure Here is a general pseduocode like outline of how SnpStore proceeds. The functionality…
09 Aug 2023 - 17:03, UnknownUser
Sol in ABI
Lösungen zu Übung 1 Solution for Exercise 2 only so far. Excercise 2 Find all occurrences! t = ACACTCCCCCGACAACC p = ACAACC occurs only at position 6 (startposi…
09 Aug 2023 - 17:03, UnknownUser
SpaceEfficientBWTConstruction in ABI
SpaceEfficientBWTConstruction Implementation of a fast and memory efficient BWT construction algorithm. Background The Burrows Wheehler Transform transforms a te…
09 Aug 2023 - 17:03, UnknownUser
SpecificationsAR in ABI
Write a SeqAn program that: * reads in….
09 Aug 2023 - 17:03, UnknownUser
StellarMotifFinder in ABI
Topic Motif finding using the STELLAR engine and SeqAn::TCoffee The project builds on work on exact local alignment by Kehr, Rausch, Emde and Reinert 1,2 . STEL…
09 Aug 2023 - 17:03, UnknownUser
StellarMotifFinderWeeklyReports in ABI
Page StellarMotifFinderWeeklyReports These are brief weekly reports about the status of the BSc Thesis StellarMotifFinder. Week 1 (25.07.2012 31.07.2012) * …
09 Aug 2023 - 17:03, UnknownUser
StellarTuning in ABI
Page StellarTuning export CPUPROFILE=stellar.prof LD_PRELOAD=
09 Aug 2023 - 17:03, UnknownUser
StructuralAndCopyNumberVariationV1 in ABI
Page StructuralAndCopyNumberVariationV1 Method using read depth from genome resequencing without case/control pairs. Implemented in pipeline at MPI MG for Stefan …
09 Aug 2023 - 17:03, UnknownUser
StundenPlan in ABI
StundenPlan Reinert / Piro / Marsico SoSe 2017 time: Monday Tuesday Wednesday Thursday Friday 8 10 10 12 SeqAnalys (VL) 051/t9 …
09 Aug 2023 - 17:03, UnknownUser
SuffixArrayConstruction in ABI
Implementation of Suffix Array Construction Algorithms The SDSL (Succinct Data Structure Library) has various implementations of string indices based on suffix ar…
09 Aug 2023 - 17:03, UnknownUser
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