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Page AdvancedAlgorithms11 Welcome to the Wiki of the Lecture Advanced Algorithms in Bioinformatics (P4). News * 28.09. (Weese): The second examination (Nachkl…

Genome Comparison and RNA Analysis Lectures Date Lecture* *Materials Genome Comparison 03.06.2011 Segment Match Refinement script 12 MatchRe…

Index Data Structures Lectures Date Lecture* *Materials (Enhanced) Suffix Array 09.05.2011 Suffix Array Construction and Searching script 07…

Online String Searching and Filtering Lectures Date Lecture* *Materials Online Searching 11.04.2011 Introduction, Horspool, Wu Manber script…

Page AdvancedAlgorithms12 Welcome to the Wiki of the Lecture Advanced Algorithms in Bioinformatics (P4). News * (18.1.13) The results of the second exam can…

Page AlgorithmsWS12 Welcome to the Wiki of the MSc lectures Algorithms News 27.03.2013: The second exam will be on Monday, April 15th (12 14, Arnimallee 6, SR03…

Analysis Methods and algorithm design Lectures Date Lecture* *Materials 19.10.2010 Run time analysis I runtime.pdf 21.10.2010 Run time analys…

Analysis Methods and algorithm design Lectures Date Lecture* *Materials 18.10.2011 Run time analysis I runtime.pdf 20.10.2011 Run time analys…

General information for programming exercises * Each group gets access to a svn directory at https://svn.mi.fu berlin.de/agbio/advancedAlgo/SS12/GroupX (Groups…

Sign up at ProgrammingGroupList for one of the exercises on Tuesday 15th and Wednesday 16th Exercise 2 Read mapping with QUASAR Deadline: 23.05.2012 9:00 a.m. Im…

Sign up at ProgrammingGroupList for one of the exercises on Tuesday 12th and Wednesday 14th Exercise 3 Compression with BWT Deadline: 24.06.2012 6:00 p.m. Implem…

MSc Thesis #8211; Analysis of protein DNA interactions from ChIP seq data Remark This thesis will be a joint project of the Algorithmische Bioinformatik group a…

Page CodingTutorial Dieses Tutorial sollte euch an die OpenMS library heranführen damit ihr die Funktionalität und Konzepte kennenlernt. Am besten nutzt ihr folg…

Combinatorial Optimization Lectures Date Lecture* * Lecture Material Additional Material 20.1.2011 Constraint Programming ConstrProg.pdf …

Combinatorial Optimization Lectures Date Lecture* * Lecture Material Additional Material 19.01.2012 Constraint Programming ConstrProg.pdf Survey …

Date Lecture* * Lecture Material Additional Material 3.2.2011 Turing machines Comput1.pdf AdditionalMaterial 8.2.2011 Undecidable problems Com…

Computability and Complexity Theory Lectures Date Lecture* * Lecture Material Additional Material 02.02.2012 Turing machines Comput1.pdf 07.02….

Fortgeschrittenenkurs C SS2011 Auf dieser Seite wird die Kurs Kommunikation stattfinden. Ebenso werden Skripte und Übungsaufgaben hier verfügbar gemacht. Skr…

Fortgeschrittenenkurs C SS2012 Auf dieser Seite wird die Kurs Kommunikation stattfinden. Ebenso werden Skripte und Übungsaufgaben hier verfügbar gemacht. *...

Page CppIntroWS10 Material zum C Kurs * sample.cpp: sample.cpp * Monday.pdf: Slides und Aufgaben für Montag * Tuesday.pdf: Slides und Aufgaben für Diens…

Page CppIntroWS11 Auf dieser Seite werden die Seminarfolien und Übungsaufgaben (letzte Seite im Skript) bereitgestellt Montag Skript, sample.cpp Dienstag …

Page CppIntroWS12 Auf dieser Seite werden die Seminarfolien und Übungsaufgaben (letzte Seite im Skript) bereitgestellt * Script_Montag.pdf * Script_Dienstag…

Page DiscretMathWS10 Welcome to the Wiki of the Lecture Discrete Mathematics News 23.3.2011 (Andreotti): Termin Nachklausur 15.4.2011, 12 14, SR006 Takustr. 9 …

Page ExerciseStore This page is supposed to be the upload area for the solutions you worked out in groups. Please also check solutions of other groups and test wh…

Graph algorithms Lectures Date Lecture* * Lecture Material Additional Material 16.11.2010 Shortest paths ShortestPaths.pdf L. Schrijver, Combi…

Graph algorithms Lectures Date Lecture* * Lecture Material Additional Material 15.11.2011 Shortest paths ShortestPaths.pdf L. Schrijver, Combina…

Page GroupList Enter the account names of your group into one of the two tables for the practical exercises in the first programming exercise week. Form groups of…

Lectures Date Lecture* *Materials 16.12.2010 Branch and Cut Intro b and c.pdf, Webpage http://www2.iwr.uni heidelberg.de/groups/comopt/software/PORT…

Combinatorial optimization and integer linear programming Lectures Date Lecture* *Materials 15.12.2011 Combinatorial Optimization ILP Introduction …

Journal Club, SoSe 2015 (19401311) Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progr…

Page JournalClubSS11 Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress reports fr…

Page JournalClubSS12 Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress reports fr…

Page JournalClubWS10 Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress reports fr…

Page JournalClubWS11 Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress reports fr…

Page JournalClubWS12 Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress reports fr…

Here is all the material for the lecture 1 * Download the slides

Here is all the material for the lecture 1 * Download the slides * Additional material: Kolman/Beck, Linear programming, Chap.1.3 1.4 (click on pdf)

Here is all the material for the lecture unit 1, lecture 2 * Watch lecture as a video: HD (about 0.5 GB or in lower res. * Download the script * Downloa…

Here is all the material for the lecture 2 * Download the slides

Linear optimization Lectures Date Lecture* * Lecture Material Additional Material 30.11.2010 Optimization problems OptProbl.pdf AdditionalMate…

Linear Optimization Lectures Date Lecture* * Lecture Material Additional Material 29.11.2010 Optimization problems Optprobl.pdf Additional Mat…

Page OptimizationWS12 Welcome to the Wiki of the MSc lecture Optimization. News (27.3.2013)The 2nd exam (together with Discrete Mathematics for Bioinformatic…

Page P4Projects Material Please download the template cmake project and use it for four project. In the Readme file you should find all the information you need …

Projektmanagement im Softwarebereich OpenMS 2011 Wiki Seite zum Praktikum Projektmanagement im Softwarebereich http://www.openms.de/ OpenMS 2011. Zeitplan…

Projektmanagement im Softwarebereich Seqan 2011 Das ist die vorläufige Wiki Seite zum Praktikum Projektmanagement im Softwarebereich Seqan. Aufteilung auf di…

General information for programming exercises * Each group gets access to a svn directory at https://svn.imp.fu berlin.de/agbio/AlgorithmsWS12/GroupX (Enter yo…

Page ProgrammingGroupList Enter the account names and your group id into one of the two tables for the practical exercises in the second programming exercise week…

Progress report Sandro Andreotti fall 2010 Work performed last 6 months * Several programming tasks were performed for the major revision of the ANTILOPE …

Page ProteinID Progress reports Progress report fall 2010 Section 2 ((content)) Comments MajorRevisionAntilope MyTodos

Proteomics, SoSe 2014 (19577) Welcome to the Wiki of the MSc seminar Proteomics. In this seminar we will discuss original articles that deal with the analysis of …

Page QuantProtP4 This is the project page of the quantitative proteomics group. Students Mail an alle Gruppenmitglieder: AA2010SS QuantProt bei lists.spline.de …

Research Logs * Genome Comparison (Birte Kehr, Manuel Holtgrewe) * Precursor Selection (Alexandra Zerck) * Indices and Applications (David Weese) * BW…

Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: alignment.pdf Übungen: Inhalt Datei Material 4. Übung A4.pdf 5. Übung …

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MSc Thesis Whole transcriptome and miRNome analysis from next generation sequencing data Remark This thesis will be a joint project of the Algorithmische Bioin…

Examination Board The exam board is in responsible for course recognition and issues concerning courses and exams. Contact With questions concerning Campus Manag…

AgabiGroup: Wiki access control group for AG ABI Edit this topic to add a description to the AgabiGroup

AG: Bioinformatics Solution Center Arbeitsgruppenleitung Dr. Sandro Andreotti, Dr. Chris Bielow Raum K21 Telefon: 030 838 50396 Sekretariat …

Master's Thesis: Peptide Sequencing Using Mathematical Programming This page is related to the thesis project "Peptide Sequencing Using Mathematical Programming "...

Statistics for Main Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads: …