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AdaptiveMolecularDynamicsSimulation
in CompMolBio
Page AdaptiveMolecularDynamicsSimulation The main page about Adaptive Molecular Dynamics Simulation (AMoDS) Project Overview The omnipresent Sampling Problem i…
AdaptiveSamplingResults
in CompMolBio
Page AdaptiveSamplingResults Overview of the Results of the Enhanced Sampling Technique so far Simulating the MR121 GSGSW We use one large simulation of the MR12…
AktinAnalysis
in CompMolBio
Page AktinAnalysis TODO Person Task State Martin calculation of electrostatic potential map of (closed_atp_dimer, closed_atp),( closed_adp_dim…
ArashTodo
in CompMolBio
Structure Diploma Thesis Arash Introduction Theory Inverse Problems and Bayes Ansatz Markov chains, Markov property Forward Backward and Expectation Maximiza…
BibTexTest
in CompMolBio
Page BibTexTest These are some example references , , . Very nice. And here the math capabilities: %$ E=mc^2 $% \mathcal N(\mu, \sigma^2) \sim \frac {1}{\sigma\s…
BornRadii
in CompMolBio
Page BornRadii This pages list the necessary steps to calculate ”perfect” GB radii for a structure given as PDB * generate a PQR file for the structure (usin…
CMBBooks
in CompMolBio
Books The column "Where?" means just: Where can I find the book by default. Does not need to be updated when someone borrows the book for some time. Author T…
FaHOverview
in CompMolBio
Folding @ Home Berlin Overview Folding@Home (also known as FAH or F@H) is a distributed computing project designed to perform computationally intensive simulation…
ImplicitSolvation
in CompMolBio
ImplicitSolvation In constrast to explicit solvation models, implicit solvation treats the solvent as bulk medium. The solvent properties are implicitly modeled b…
MartinFischbachTodo2010
in CompMolBio
Page MartinFischbachTodo2010 Martin Fischbach PhD Plans and Milestones (Mainly 2010) Software Platform * End 2009: Abschluss Architekturplanung Softwareplat…
MartinTodo2010
in CompMolBio
Martin Held Agenda 2010 TPT 3D * Nov 09: Pathway Figures * Nov 09: Isocommittor surfaces / lines * Nov 09: Committor vs. PMF, Erwartungswert der mindist…
Metastability
in CompMolBio
Metastability, geometric clustering and PCA PCA Es wird häufig angenommen, dass die langsamen Ereignisse komplett in den ersten PCA Komponenten zu finden sind, d…
OpenProblems
in CompMolBio
Open Scientific Questions, Problems and Trash.Projects I: Analysis and Modeling of Molecular Dynamics Essential Problems Reliable and Automatic Generation of a…
PhDJanWigger
in CompMolBio
A microscopic approach towards protein folding via transition networks Goal Etablierung eines methodischen Rahmens zur Modellierung der Konformationsdynamik von…
SamplingGroup
in CompMolBio
Page SamplingGroup ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
SingleMoleculeFRET
in CompMolBio
Single Molecule FRET analysis and modeling DFG Proposal. Joint Project by Uli Nienhaus (Experiments), Helmut Grubmüller (Simulation Modeling) and Frank Noe (Model…
SoftwareFramework
in CompMolBio
Software Framework for Time Series Analysis / Phase Profiler Overview SoftwareFramework_Mindmap.pdf: Mindmap of ideas for Software Framework Goal This project a…
TGFReceptors
in CompMolBio
BMP Rezeptor brainstorming * Die Frage "was ist der Nutzen von 2 Rezeptortypen vs. 1 Rezeptortyp" ist biologisch interessant und kann durch eine Kombination vo…
TorstenTodo
in CompMolBio
Diplomarbeit Torsten Lüdge Theory Inverse Problems and Bayes Ansatz FRET Trajectory estimation: Window method, Optimal Random Walk (Probability to Obse…
TransitionPathTheoryHeld
in CompMolBio
Transition Path Theory of Protein:Ligand Binding Processes Goal Ziel: Modellierung der Bildung eines Kollisionskomplexes und des darauf folgenden Bindungvorgang…
UDPGlcNAc
in CompMolBio
Page UDPGlcNAc * PDB Entry 1VGV contains a structure of UDP GlcNAc Epimerase with bound UDP GalNAc (it rather looks like UDP ManNAc?!) * given the coordinat…
WebStatistics
in CompMolBio
Statistics for CompMolBio Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and upload…
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