You are here: Wiki>LiSA Web>WebRss (28 Mar 2005, ProjectContributor)Edit

News

Aug 2013
yoshiko version 2.0

We have released yoshiko version 2.0, a mature version of our cluster editing algorithm. It has been implemented mostly by Emanuel Laude and contains a lot of helpful redcution rules from fixed parameter algorithmics and a powerful heuristic for large data sets.

24 Aug 2011
natalie version 2.0

We have released natalie version 2.0, a mature version of our network alignment algorithm.

27 Jun 2011
side chain placement

scp is a package that contains our code for exact side chain placement as used in a recent paper in Optimization Letters.

5 Mar 2010
heinz and BioNet

heinz now works together with the BioNet package.

17 Dec 2008
yoshiko/charles

The yoshiko/charles code is now online. The tool solves the cluster editing problem as well as its directed "cousin", the transitivity editing problem, to provable optimality.

1 Sep 2008
planet lisa moves to Amsterdam

The planet lisa project is now based at the Centre for Mathematics and Computer Science (CWI) in Amsterdam, The Netherlands.

20 Jul 2008
ISMB 2008

Our paper Identifying Functional Modules in Protein-Protein Interaction Data: An Integrated Exact Approach has won the oustanding paper award at ISMB 2008 in Toronto, Canada. See the heinz section for more information on our software to discover optimal subnetworks with respect to our signal-based scoring scheme of p-values.

Jul 2008
ISMB 2008

We will give a presentation at ISMB 2008 on Identifying Functional Modules in Protein-Protein Interaction Data: An Integrated Exact Approach. Our software is available as the heinz package.

Oct 07
Algorithmic Operations Research

Our theoretical lara paper has been accepted for publication in Algorithmic Operations Research.

27 Jul 07
BMC Bioinformatics

The paper describing the lara program has been accepted for publication in BMC Bioinformatics.

28 Jun 07
4SALE support for lara

lara has been integrated into the RNA alignment and editing framework 4SALE. Get the latest lara version that is compatible with 4SALE.
Wiki's LiSA web http://www.mi.fu-berlin.de/w/LiSA The LiSA web of TWiki. TWiki is a Web-Based Collaboration Platform for the Enterprise. en-us Copyright 2019 by contributing authors Wiki Administrator [staff@mi.fu-berlin.de] The contributing authors of Wiki Wiki Logo der Freien Universität <a class="foswikiNewLink" href="/wiki/bin/edit/Berlin/LiSA?topicparent=LiSA.WebRss" rel="nofollow" title="Create this topic">LiSA</a> http://www.mi.fu-berlin.de/w/LiSA http://www.mi.fu-berlin.de/wiki/pub/System/ProjectLogos/Logo_Web_RGB.gif YoshikoCharles http://www.mi.fu-berlin.de/w/LiSA/YoshikoCharles yoshiko and charles The planet LiSA library is now hosted in "Amsterdam" https://github.com/ls cwi yoshiko computes exact solutions to the Cluster Editing problem ... (last changed by BodoRiedigerKlaus) 2017-03-08T14:48:30Z bodo WebHome http://www.mi.fu-berlin.de/w/LiSA/WebHome planet LiSA The Project has moved again.On Interest Contact Prof. Gunnar Klau, Heinrich Heine University Düsseldorf Part of the planet LiSA library is hosted in ... (last changed by BodoRiedigerKlaus) 2017-03-08T14:40:34Z bodo Natalie http://www.mi.fu-berlin.de/w/LiSA/Natalie Natalie The planet LiSA library is now hosted in "Amsterdam" MOVED To https://github.com/ls cwi/natalie Introduction natalie is a tool for pairwise global network ... (last changed by BodoRiedigerKlaus) 2017-03-08T14:05:01Z bodo WebTopBar http://www.mi.fu-berlin.de/w/LiSA/WebTopBar Startseite Personen Impressum Sitemap CMS Sitemap Wiki Kontakt Schnellzugriff ' else=''}% $(document).ready(function() { ... (last changed by LutzPrechelt) 2017-03-03T17:23:29Z prechelt Heinz http://www.mi.fu-berlin.de/w/LiSA/Heinz heinz Heinz 1.0 is an outdated version. For the most recent version, see https://github.com/ls cwi/heinz The planet LiSA library is now hosted in "Amsterdam" heinz ... (last changed by BodoRiedigerKlaus) 2015-10-01T11:46:29Z bodo LiSAlibrary http://www.mi.fu-berlin.de/w/LiSA/LiSAlibrary LiSA library The planet LiSA library is now hosted in "Amsterdam" Here you find information on downloading and installing the LiSA library. LiSA concept The library ... (last changed by UnknownUser) 2015-04-28T17:11:23Z unknown LiSASupplData http://www.mi.fu-berlin.de/w/LiSA/LiSASupplData LiSA supplemental data The planet LiSA library is now hosted in "Amsterdam" Here you find supplemental data that we used in our publications. Accurate Multiple ... (last changed by UnknownUser) 2015-04-28T17:09:43Z unknown LiSAhelpers http://www.mi.fu-berlin.de/w/LiSA/LiSAhelpers LiSA helpers The planet LiSA library is now hosted in "Amsterdam" LiSA helpers are small and useful tools created with the LiSA library. If you use one of these ... (last changed by UnknownUser) 2015-04-28T17:09:40Z unknown Sally http://www.mi.fu-berlin.de/w/LiSA/Sally sally The planet LiSA library is now hosted in "Amsterdam" This entry is very much work in progress. sally is a tool that solves the following combinatorial selection ... (last changed by UnknownUser) 2015-04-28T17:09:31Z unknown Plara http://www.mi.fu-berlin.de/w/LiSA/Plara plara The planet LiSA library is now hosted in "Amsterdam" plara computes multiple sequence structure alignments of RNA sequences. In contrast to its sister tool ... (last changed by UnknownUser) 2015-04-28T17:09:22Z unknown Peggi http://www.mi.fu-berlin.de/w/LiSA/Peggi Peggi The planet LiSA library is now hosted in "Amsterdam" peggi stands for permutation equivalent generalized graph isomorphism and computes large equivalent submatrices ... (last changed by UnknownUser) 2015-04-28T17:09:17Z unknown Paul http://www.mi.fu-berlin.de/w/LiSA/Paul Paul The planet LiSA library is now hosted in "Amsterdam" Introduction PAUL (Protein Alignment Using Lagrangian relaxation) 3 is a tool for the computation of ... (last changed by UnknownUser) 2015-04-28T17:09:10Z unknown Lara http://www.mi.fu-berlin.de/w/LiSA/Lara lara The planet LiSA library is now hosted in "Amsterdam" lara ("lagrangian relaxed structural alignment") is a tool for the sequence structure alignment of RNA ... (last changed by UnknownUser) 2015-04-28T17:08:52Z unknown Team http://www.mi.fu-berlin.de/w/LiSA/Team Team The following people have contributed to LiSA: Gunnar W. Klau coordination, natalie , peggi , lasse , sally , heinz Mohammed El Kebir main ... (last changed by GunnarKlau) 2013-09-09T18:53:37Z guwek WebNews http://www.mi.fu-berlin.de/w/LiSA/WebNews News Aug 2013yoshiko version 2.0 We have released yoshiko version 2.0, a mature version of our cluster editing algorithm. It has been implemented mostly by Emanuel ... (last changed by GunnarKlau) 2013-09-09T18:36:18Z guwek Scp http://www.mi.fu-berlin.de/w/LiSA/Scp Scp Introduction runLagrange 1 is a tool that computes provably optimal solutions to the side chain placement problem. Note runLagrange needs to be linked dynamically ... (last changed by GunnarKlau) 2011-07-18T11:55:53Z guwek
Topic revision: r4 - 28 Mar 2005, ProjectContributor
 
  • Printable version of this topic (p) Printable version of this topic (p)