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News

Aug 2013
yoshiko version 2.0

We have released yoshiko version 2.0, a mature version of our cluster editing algorithm. It has been implemented mostly by Emanuel Laude and contains a lot of helpful redcution rules from fixed parameter algorithmics and a powerful heuristic for large data sets.

24 Aug 2011
natalie version 2.0

We have released natalie version 2.0, a mature version of our network alignment algorithm.

27 Jun 2011
side chain placement

scp is a package that contains our code for exact side chain placement as used in a recent paper in Optimization Letters.

5 Mar 2010
heinz and BioNet

heinz now works together with the BioNet package.

17 Dec 2008
yoshiko/charles

The yoshiko/charles code is now online. The tool solves the cluster editing problem as well as its directed "cousin", the transitivity editing problem, to provable optimality.

1 Sep 2008
planet lisa moves to Amsterdam

The planet lisa project is now based at the Centre for Mathematics and Computer Science (CWI) in Amsterdam, The Netherlands.

20 Jul 2008
ISMB 2008

Our paper Identifying Functional Modules in Protein-Protein Interaction Data: An Integrated Exact Approach has won the oustanding paper award at ISMB 2008 in Toronto, Canada. See the heinz section for more information on our software to discover optimal subnetworks with respect to our signal-based scoring scheme of p-values.

Jul 2008
ISMB 2008

We will give a presentation at ISMB 2008 on Identifying Functional Modules in Protein-Protein Interaction Data: An Integrated Exact Approach. Our software is available as the heinz package.

Oct 07
Algorithmic Operations Research

Our theoretical lara paper has been accepted for publication in Algorithmic Operations Research.

27 Jul 07
BMC Bioinformatics

The paper describing the lara program has been accepted for publication in BMC Bioinformatics.

28 Jun 07
4SALE support for lara

lara has been integrated into the RNA alignment and editing framework 4SALE. Get the latest lara version that is compatible with 4SALE.

50 recent changes in LiSA Web retrieved at 01:27 (GMT)

WebStatistics
Statistics for LiSA Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads: ...
YoshikoCharles
yoshiko and charles The planet LiSA library is now hosted in "Amsterdam" https://github.com/ls cwi yoshiko computes exact solutions to the Cluster Editing problem ...
WebHome
planet LiSA The Project has moved again.On Interest Contact Prof. Gunnar Klau, Heinrich Heine University Düsseldorf Part of the planet LiSA library is hosted in ...
Natalie
Natalie The planet LiSA library is now hosted in "Amsterdam" MOVED To https://github.com/ls cwi/natalie Introduction natalie is a tool for pairwise global network ...
WebTopBar
Startseite Personen Impressum Sitemap CMS Sitemap Wiki Kontakt Schnellzugriff ' else=''}% $(document).ready(function() { ...
Heinz
heinz Heinz 1.0 is an outdated version. For the most recent version, see https://github.com/ls cwi/heinz The planet LiSA library is now hosted in "Amsterdam" heinz ...
LiSAlibrary
LiSA library The planet LiSA library is now hosted in "Amsterdam" Here you find information on downloading and installing the LiSA library. LiSA concept The library ...
LiSASupplData
LiSA supplemental data The planet LiSA library is now hosted in "Amsterdam" Here you find supplemental data that we used in our publications. Accurate Multiple ...
LiSAhelpers
LiSA helpers The planet LiSA library is now hosted in "Amsterdam" LiSA helpers are small and useful tools created with the LiSA library. If you use one of these ...
Sally
sally The planet LiSA library is now hosted in "Amsterdam" This entry is very much work in progress. sally is a tool that solves the following combinatorial selection ...
Plara
plara The planet LiSA library is now hosted in "Amsterdam" plara computes multiple sequence structure alignments of RNA sequences. In contrast to its sister tool ...
Peggi
Peggi The planet LiSA library is now hosted in "Amsterdam" peggi stands for permutation equivalent generalized graph isomorphism and computes large equivalent submatrices ...
Paul
Paul The planet LiSA library is now hosted in "Amsterdam" Introduction PAUL (Protein Alignment Using Lagrangian relaxation) 3 is a tool for the computation of ...
Lara
lara The planet LiSA library is now hosted in "Amsterdam" lara ("lagrangian relaxed structural alignment") is a tool for the sequence structure alignment of RNA ...
Team
Team The following people have contributed to LiSA: Gunnar W. Klau coordination, natalie , peggi , lasse , sally , heinz Mohammed El Kebir main ...
WebNews
News Aug 2013yoshiko version 2.0 We have released yoshiko version 2.0, a mature version of our cluster editing algorithm. It has been implemented mostly by Emanuel ...
Scp
Scp Introduction runLagrange 1 is a tool that computes provably optimal solutions to the side chain placement problem. Note runLagrange needs to be linked dynamically ...
WebLeftBar
* Home * LiSA library * LiSA tools * heinz * lara * natalie * paul * peggi * plara * sally * yoshiko/charles ...
WebPreferences
LiSA Web Preferences The following settings are web preferences of the LiSA web. These preferences overwrite the site level preferences in . and , and can ...
Licensing
Licensing © 2003 2007, LiSA team This library is free software. You can redistribute it and/or modify it under the terms of the GNU Lesser General Public License ...
LiSAcite
G. W. Klau, M. Bauer, P. May, L. Petzold. LiSA. Library of Structural Alignment Algorithms. Manuscript, 2007. http://www.planet lisa.net
WebNotify
* Main.GunnarKlau gunnar #64;math.fu berlin.de * Main.WikiGuest example #64;your.company __ .WebChangesAlert, ., .UserRegistration
Miro
Miro miro is a microRNA detection tool, which gets one or several genomes as input and outputs a list of potential microRNA candidates. The tool is almost finished ...
Lasse
Lasse lasse stands for Lagrangian non sequential alignment of protein secondary structure elements. The tool takes two PDB files as input and computes an optimal non ...
Download
Download Download selected LiSA tools or the whole library. lara lara is the oldest member of the LiSA family. Given a number of RNA sequences in standard formats ...
HelpMe
Help Me! left bar: https://www.mi.fu berlin.de/w/LiSA/WebLeftBar
PeopleList
People The following people have contributed to LiSA: Gunnar W. Klau coordination, network alignment, natalie , peggi , lasse Markus Bauer main developer ...
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Topic revision: r3 - 15 Nov 2006, ProjectContributor
 
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