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News

Aug 2013
yoshiko version 2.0

We have released yoshiko version 2.0, a mature version of our cluster editing algorithm. It has been implemented mostly by Emanuel Laude and contains a lot of helpful redcution rules from fixed parameter algorithmics and a powerful heuristic for large data sets.

24 Aug 2011
natalie version 2.0

We have released natalie version 2.0, a mature version of our network alignment algorithm.

27 Jun 2011
side chain placement

scp is a package that contains our code for exact side chain placement as used in a recent paper in Optimization Letters.

5 Mar 2010
heinz and BioNet

heinz now works together with the BioNet package.

17 Dec 2008
yoshiko/charles

The yoshiko/charles code is now online. The tool solves the cluster editing problem as well as its directed "cousin", the transitivity editing problem, to provable optimality.

1 Sep 2008
planet lisa moves to Amsterdam

The planet lisa project is now based at the Centre for Mathematics and Computer Science (CWI) in Amsterdam, The Netherlands.

20 Jul 2008
ISMB 2008

Our paper Identifying Functional Modules in Protein-Protein Interaction Data: An Integrated Exact Approach has won the oustanding paper award at ISMB 2008 in Toronto, Canada. See the heinz section for more information on our software to discover optimal subnetworks with respect to our signal-based scoring scheme of p-values.

Jul 2008
ISMB 2008

We will give a presentation at ISMB 2008 on Identifying Functional Modules in Protein-Protein Interaction Data: An Integrated Exact Approach. Our software is available as the heinz package.

Oct 07
Algorithmic Operations Research

Our theoretical lara paper has been accepted for publication in Algorithmic Operations Research.

27 Jul 07
BMC Bioinformatics

The paper describing the lara program has been accepted for publication in BMC Bioinformatics.

28 Jun 07
4SALE support for lara

lara has been integrated into the RNA alignment and editing framework 4SALE. Get the latest lara version that is compatible with 4SALE.
Wiki's LiSA web The LiSA web of TWiki. TWiki is a Web-Based Collaboration Platform for the Enterprise. http://www.mi.fu-berlin.de/w/LiSA Copyright 2019 by contributing authors 2019-05-23T02:03:40Z WebStatistics http://www.mi.fu-berlin.de/w/LiSA/WebStatistics 2019-05-23T02:03:40Z Statistics for LiSA Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads: ... (last changed by AdminUser) AdminUser YoshikoCharles http://www.mi.fu-berlin.de/w/LiSA/YoshikoCharles 2017-03-08T14:48:30Z yoshiko and charles The planet LiSA library is now hosted in "Amsterdam" https://github.com/ls cwi yoshiko computes exact solutions to the Cluster Editing problem ... (last changed by BodoRiedigerKlaus) BodoRiedigerKlaus WebHome http://www.mi.fu-berlin.de/w/LiSA/WebHome 2017-03-08T14:40:34Z planet LiSA The Project has moved again.On Interest Contact Prof. Gunnar Klau, Heinrich Heine University Düsseldorf Part of the planet LiSA library is hosted in ... (last changed by BodoRiedigerKlaus) BodoRiedigerKlaus Natalie http://www.mi.fu-berlin.de/w/LiSA/Natalie 2017-03-08T14:05:01Z Natalie The planet LiSA library is now hosted in "Amsterdam" MOVED To https://github.com/ls cwi/natalie Introduction natalie is a tool for pairwise global network ... (last changed by BodoRiedigerKlaus) BodoRiedigerKlaus WebTopBar http://www.mi.fu-berlin.de/w/LiSA/WebTopBar 2017-03-03T17:23:29Z Startseite Personen Impressum Sitemap CMS Sitemap Wiki Kontakt Schnellzugriff ' else=''}% $(document).ready(function() { ... (last changed by LutzPrechelt) LutzPrechelt Heinz http://www.mi.fu-berlin.de/w/LiSA/Heinz 2015-10-01T11:46:29Z heinz Heinz 1.0 is an outdated version. For the most recent version, see https://github.com/ls cwi/heinz The planet LiSA library is now hosted in "Amsterdam" heinz ... (last changed by BodoRiedigerKlaus) BodoRiedigerKlaus LiSAlibrary http://www.mi.fu-berlin.de/w/LiSA/LiSAlibrary 2015-04-28T17:11:23Z LiSA library The planet LiSA library is now hosted in "Amsterdam" Here you find information on downloading and installing the LiSA library. LiSA concept The library ... (last changed by UnknownUser) UnknownUser LiSASupplData http://www.mi.fu-berlin.de/w/LiSA/LiSASupplData 2015-04-28T17:09:43Z LiSA supplemental data The planet LiSA library is now hosted in "Amsterdam" Here you find supplemental data that we used in our publications. Accurate Multiple ... (last changed by UnknownUser) UnknownUser LiSAhelpers http://www.mi.fu-berlin.de/w/LiSA/LiSAhelpers 2015-04-28T17:09:40Z LiSA helpers The planet LiSA library is now hosted in "Amsterdam" LiSA helpers are small and useful tools created with the LiSA library. If you use one of these ... (last changed by UnknownUser) UnknownUser Sally http://www.mi.fu-berlin.de/w/LiSA/Sally 2015-04-28T17:09:31Z sally The planet LiSA library is now hosted in "Amsterdam" This entry is very much work in progress. sally is a tool that solves the following combinatorial selection ... (last changed by UnknownUser) UnknownUser Plara http://www.mi.fu-berlin.de/w/LiSA/Plara 2015-04-28T17:09:22Z plara The planet LiSA library is now hosted in "Amsterdam" plara computes multiple sequence structure alignments of RNA sequences. In contrast to its sister tool ... (last changed by UnknownUser) UnknownUser Peggi http://www.mi.fu-berlin.de/w/LiSA/Peggi 2015-04-28T17:09:17Z Peggi The planet LiSA library is now hosted in "Amsterdam" peggi stands for permutation equivalent generalized graph isomorphism and computes large equivalent submatrices ... (last changed by UnknownUser) UnknownUser Paul http://www.mi.fu-berlin.de/w/LiSA/Paul 2015-04-28T17:09:10Z Paul The planet LiSA library is now hosted in "Amsterdam" Introduction PAUL (Protein Alignment Using Lagrangian relaxation) 3 is a tool for the computation of ... (last changed by UnknownUser) UnknownUser Lara http://www.mi.fu-berlin.de/w/LiSA/Lara 2015-04-28T17:08:52Z lara The planet LiSA library is now hosted in "Amsterdam" lara ("lagrangian relaxed structural alignment") is a tool for the sequence structure alignment of RNA ... (last changed by UnknownUser) UnknownUser Team http://www.mi.fu-berlin.de/w/LiSA/Team 2013-09-09T18:53:37Z Team The following people have contributed to LiSA: Gunnar W. Klau coordination, natalie , peggi , lasse , sally , heinz Mohammed El Kebir main ... (last changed by GunnarKlau) GunnarKlau WebNews http://www.mi.fu-berlin.de/w/LiSA/WebNews 2013-09-09T18:36:18Z News Aug 2013yoshiko version 2.0 We have released yoshiko version 2.0, a mature version of our cluster editing algorithm. It has been implemented mostly by Emanuel ... (last changed by GunnarKlau) GunnarKlau
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