24 Aug 2011]
natalie version 2.0
We have released natalie
version 2.0, a mature version of our network alignment algorithm.
[27 Jun 2011]
side chain placement
is a package that contains our code for exact side chain placement as used in a recent paper in Optimization Letters.
[5 Mar 2010]
heinz and BioNet
now works together with the BioNet
[17 Dec 2008]
code is now online. The tool solves the cluster editing problem as well as its directed "cousin", the comparability editing problem, to provable optimality.
[1 Sep 2008]
planet lisa moves to Amsterdam
The planet lisa project is now based at the Centre for Mathematics and Computer Science (CWI)
in Amsterdam, The Netherlands.
[20 Jul 2008]
Our paper Identifying Functional Modules in Protein-Protein Interaction Data: An Integrated Exact Approach
has won the oustanding paper award
at ISMB 2008
in Toronto, Canada. See the heinz
section for more information on our software to discover optimal subnetworks with respect to our signal-based scoring scheme of p-values.
We will give a presentation at ISMB 2008 on Identifying Functional Modules in Protein-Protein Interaction Data: An Integrated Exact Approach
. Our software is available as the heinz
Algorithmic Operations Research
Our theoretical lara paper has been accepted for publication in Algorithmic Operations Research.
[27 Jul 07]
describing the lara
program has been accepted for publication in BMC Bioinformatics
[28 Jun 07]
4SALE support for lara
has been integrated into the RNA alignment and editing framework 4SALE
. Get the latest lara
version that is compatible with 4SALE