News

24 Aug 2011]
natalie version 2.0

We have released natalie version 2.0, a mature version of our network alignment algorithm.

[27 Jun 2011]
side chain placement

scp is a package that contains our code for exact side chain placement as used in a recent paper in Optimization Letters.

[5 Mar 2010]
heinz and BioNet

heinz now works together with the BioNet package.

[17 Dec 2008]
yoshiko/charles

The yoshiko/charles code is now online. The tool solves the cluster editing problem as well as its directed "cousin", the comparability editing problem, to provable optimality.

[1 Sep 2008]
planet lisa moves to Amsterdam

The planet lisa project is now based at the Centre for Mathematics and Computer Science (CWI) in Amsterdam, The Netherlands.

[20 Jul 2008]
ISMB 2008

Our paper Identifying Functional Modules in Protein-Protein Interaction Data: An Integrated Exact Approach has won the oustanding paper award at ISMB 2008 in Toronto, Canada. See the heinz section for more information on our software to discover optimal subnetworks with respect to our signal-based scoring scheme of p-values.

[Jul 2008]
ISMB 2008

We will give a presentation at ISMB 2008 on Identifying Functional Modules in Protein-Protein Interaction Data: An Integrated Exact Approach. Our software is available as the heinz package.

[Oct 07]
Algorithmic Operations Research

Our theoretical lara paper has been accepted for publication in Algorithmic Operations Research.

[27 Jul 07]
BMC Bioinformatics

The paper describing the lara program has been accepted for publication in BMC Bioinformatics.

[28 Jun 07]
4SALE support for lara

lara has been integrated into the RNA alignment and editing framework 4SALE. Get the latest lara version that is compatible with 4SALE.