Martin Fischbach
PhD - Plans and Milestones (Mainly 2010)
- End 2009: Abschluss Architekturplanung Softwareplattform (Core, Timeseries, MD, HMMs)
- End 2009: MSM Tools on Website
- Mid 2010: Have essential Algorithms implemented in new Architecture
- End 2010: Release
- End 2010: JCC paper on Software Platform
Slow Kinetics From Short Trajectories
- Estimate stationary Distribution from MD Transition Network (Test on MR121-GSGS-W or another peptide)
- End 2009: Define Test System
- Validate Method (Error evaluation). Compare stat.dist. from short and long Trajectories.
- Compute Markov model for long trajectories
- Reweight short Trajectories, compute Markov model.
- Compare Models
- Compare Short Model to direct long Trajectory analysis.
- Mid 2010: Forecast paper
Third Subject (Probably Adaptive Sampling)
- now - Mid 2010: Find biophysically interesting System + Process
- Mid 2010 - End 2011: Produce Results