Page MartinFischbachTodo2010

Martin Fischbach PhD - Plans and Milestones (Mainly 2010)

Software Platform

  • End 2009: Abschluss Architekturplanung Softwareplattform (Core, Timeseries, MD, HMMs)
  • End 2009: MSM Tools on Website
  • Mid 2010: Have essential Algorithms implemented in new Architecture
  • End 2010: Release
  • End 2010: JCC paper on Software Platform

Slow Kinetics From Short Trajectories

  • Estimate stationary Distribution from MD Transition Network (Test on MR121-GSGS-W or another peptide)
  • End 2009: Define Test System
  • Validate Method (Error evaluation). Compare stat.dist. from short and long Trajectories.
  • Compute Markov model for long trajectories
  • Reweight short Trajectories, compute Markov model.
  • Compare Models
  • Compare Short Model to direct long Trajectory analysis.
  • Mid 2010: Forecast paper

Third Subject (Probably Adaptive Sampling)

  • now - Mid 2010: Find biophysically interesting System + Process
  • Mid 2010 - End 2011: Produce Results

Comments

 
Topic revision: r2 - 15 Jun 2012, AntoniaMey
 
  • Printable version of this topic (p) Printable version of this topic (p)