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AlgLecture10MaterialsWS15
AlgLecture10MaterialsWS15 ((Tree decomposition)) Lecture plan Outline of lecture Comments
AlgLecture10MaterialsWS16
http://www.mi.fu berlin.de/wiki/pub/ABI/AlgLecture10MaterialsWS14/script.pdf
AlgLecture11MaterialsWS15
AlgLecture11MaterialsWS15 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
AlgLecture11MaterialsWS16
AlgLecture11MaterialsWS16 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
AlgLecture12MaterialsWS15
Here is all the material for the lecture 12 * Download the slides * Video on Alan Turing Comments
AlgLecture12MaterialsWS16
Here is all the material for the lecture 12 * Download the slides * Video on Alan Turing Comments
AlgLecture13MaterialsWS15
Here is all the material for the lecture 13 * Download the slides * Additional material 1 : Turing machines as enumerators * Additional material 2 : Undecidable ...
AlgLecture13MaterialsWS16
Here is all the material for the lecture 13 * Download the slides * Additional material 1 : Turing machines as enumerators * Additional material 2 : Undecidable ...
AlgLecture14MaterialsWS15
Here is all the material for the lecture 14 * Download the slides Comments
AlgLecture14MaterialsWS16
Here is all the material for the lecture 14 * Download the slides Comments
AlgLecture15MaterialsWS15
Here is all the material for the lecture 15 * Download the slides
AlgLecture15MaterialsWS16
Here is all the material for the lecture 15 * Download the slides
AlgLecture1MaterialsWS15
AlgLecture1MaterialsWS15 ((Introduction, types of algorithms, and basic runtime analysis part 1)) Lecture plan Outline of lecture Comments
AlgLecture1MaterialsWS16
http://www.mi.fu berlin.de/wiki/pub/ABI/AlgLecture1MaterialsWS14/script.pdf
AlgLecture2MaterialsWS15
AlgLecture2MaterialsWS15 ((Basic runtime analysis part 2)) Lecture plan Outline of lecture Comments
AlgLecture2MaterialsWS16
AlgLecture2MaterialsWS16 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
AlgLecture3MaterialsWS15
Here is all the material for Lecture 3 * Download slides * Download lecture notes by A. Schrijver, CWI Amsterdam (Chap.1.1 1.3)
AlgLecture3MaterialsWS16
Here is all the material for Lecture 3 * Download slides * Download lecture notes by A. Schrijver, CWI Amsterdam (Chap.1.1 1.3)
AlgLecture4MaterialsWS15
Here is all the material for Lecture 4 * Download slides * Download lecture notes by A. Schrijver, CWI Amsterdam (Chap.4.2 4.4) * Some history Comments ...
AlgLecture4MaterialsWS16
Here is all the material for Lecture 4 * Download slides * Download lecture notes by A. Schrijver, CWI Amsterdam (Chap.4.2 4.4) * Some history Comments ...
AlgLecture5MaterialsWS15
Here is all the material for Lecture 5 * Download slides * Download lecture notes by A. Schrijver, CWI Amsterdam (Chap.3.1,3.2,3.4) * Some history: Jack ...
AlgLecture5MaterialsWS16
Here is all the material for Lecture 5 * Download slides * Download lecture notes by A. Schrijver, CWI Amsterdam (Chap.3.1,3.2,3.4) * Some history: Jack ...
AlgLecture6MaterialsWS15
AlgLecture6MaterialsWS15 ((Hashing and modulo arithmetic part 1)) Lecture plan Outline of lecture Update: supplementary notes accompanying the prime arithmetic discussion ...
AlgLecture6MaterialsWS16
https://www.mi.fu berlin.de/wiki/pub/ABI/AlgLecture6MaterialsWS14/script.pdf http://colorfulengineering.org/modular inverse.pdf
AlgLecture7MaterialsWS15
AlgLecture7MaterialsWS15 ((Hashing part 2)) Lecture plan Outline of lecture Comments
AlgLecture7MaterialsWS16
AlgLecture7MaterialsWS16 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
AlgLecture8MaterialsWS15
AlgLecture8MaterialsWS15 ((Skip lists part 1)) Lecture plan Outline of lecture Comments
AlgLecture8MaterialsWS16
https://www.mi.fu berlin.de/wiki/pub/ABI/AlgLecture8MaterialsWS14/script.pdf
AlgLecture9MaterialsWS15
AlgLecture9MaterialsWS15 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
AlgLecture9MaterialsWS16
AlgLecture9MaterialsWS16 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
AlgoSS11
Willkommen im Vorlesungs Wiki Algorithmen in der Systembiologie (P3) SS 2011 News Klausurergebnisse Ergebnisse Nachklausur Allgemeine Informationen SWS ...
AlgoSS12
Willkommen im Vorlesungs Wiki Algorithmen in der Systembiologie (P3) SS 2012 News Klausurergebnisse Ergebnisse Nachklausur Allgemeine Informationen SWS ...
AlgorithmsProgrammingCodeReview
The code review takes place on the 22nd of February in room 010 in the Takustraße 9. Please, fill in the group number into your desired time slot. Back to programming ...
AlgorithmsProgrammingExerciseWS15
Please, send the name (given name and surname) and zedat login name of your three group members to Christopher Pockrandt via e mail. As soon as you your name appears ...
AlgorithmsWS15
Algorithms (WiSe 2015) Welcome to the Wiki of the MSc lectures Algorithms (VL: 19400501, UE: 19400502) General Information SWS: 2 2 ECTS: 6 Lecturers: Alexander ...
AlgorithmsWS16
Algorithms (WiSe 2016) Welcome to the Wiki of the MSc lectures Algorithms (VL: 19400501, UE: 19400502) General Information SWS: 2 2 ECTS: 6 Lecturers: Alexander ...
Documentation
Page Documentation ((Dokumentation Download Links zu den verwendeten Tools.)) Python v2.6.6 7.1 * Interpreter und IDE: http://www.python.org/download/. * ...
ForschungsSeminar
Welcome to our Forschungsseminar wiki Organizer Prof. Dr. Alexander Bockmayr Description The Forschungsseminar is a regular (weekly) meeting of the Mathematics in ...
HAnalysis
Willkommen zum wiki Höhere Analysis SS 2011 News Klausureinsicht (Nachklausur vom 13.10.) am 17.10., 13:30 14:00 in Raum 101, Arnimallee 6 Falls Sie den Termin ...
MolNetzSS11
Welcome to the lecture wiki Molekulare Netzwerke (B) SS 2011 News General Information SWS/credit hrs: 2, credits: 4 ECTS Lecturer: Alexander Bockmayr Content ...
MolNetzSS12
Welcome to the lecture wiki Molekulare Netzwerke (B) SS 2012 News Die Noten für das Seminar "Regulatorische Netzwerke" sind da. Wegen großer Nachfrage wird das ...
MolNetzSS13
Welcome to the lecture wiki Molekulare Netzwerke (B) SS 2013 News Deadline for extended abstracts: 30 September 2013 General Information SWS/credit hrs: 2, credits ...
MolNetzWS15
Welcome to the lecture wiki Molekulare Netzwerke (B) WS 2014/15 News Deadline for extended abstract / poster: 31 March 2015 General Information SWS/credit hrs ...
MolNetzWS16
Welcome to the seminar wiki Molekulare Netzwerke WS 2015/16 News General Information SWS/credit hrs: 2, credits: 5 ECTS Lecturer: Alexander Bockmayr Language: ...
MolnetzASS14
Welcome to the Lectures Wiki Metabolic Networks SS 2014 News General information SWS: 3, ECTS: 5 Lecturer: Alexander Bockmayr / Annika Röhl Language: English / ...
r35 - 19 Apr 2016 - 13:47 by AnnikaRoehl
MolnetzASS15
Welcome to the Lectures Wiki Metabolic Networks SS 2015 News General information SWS: 2 1, ECTS: 5 Lecturer: Alexander Bockmayr Tutor: Therese Lorenz Language: ...
MolnetzASS16
Welcome to the Lectures Wiki Metabolic Networks SS 2016 News General information SWS: 2 1, ECTS: 5 Lecturer: Alexander Bockmayr Tutor: Annika Röhl Language: English ...
MolnetzASS16_1
Exercise 1: Flux Balance Analysis and Flux Variability Analysis Deadline: Tuesday, 17.05.2016, 08:00 a.m. FBA Write a program that: * reads in a metabolic network ...
r2 - 17 May 2016 - 09:18 by AnnikaRoehl
MolnetzASS16_2
Exercise 2: Flux Coupling Analysis and a reducing tool Deadline: Tuesday, 31.05.2016, 08:00 a.m. FCA Write a program that: * reads in a metabolic network: a ...
r8 - 30 May 2016 - 08:29 by AnnikaRoehl
MolnetzASS16_3
Exercise 3: Shortest EFMs Deadline: Tuesday, 14.06.2016, 08:00 a.m. Shortest EFM Write a program that: * reads in a metabolic network: a struct in a .mat file ...
NEW - 02 Jun 2016 - 10:21 by AnnikaRoehl
MolnetzASS16_4
Exercise 4: Targeted EFMs and test Deadline: Tuesday, 28.06.2016, 08:00 a.m. Targeted EFM Use your program you wrote to find kshortest EFMs. Change it such that ...
NEW - 15 Jun 2016 - 12:19 by AnnikaRoehl
MolnetzASS16_5
Exercise 3: Shortest GFMs Deadline: Tuesday, 12.07.2016, 08:00 a.m. k shortest GFMs and MMBs Write a program that: * reads in a metabolic network: a struct in ...
r2 - 30 Jun 2016 - 09:56 by AnnikaRoehl
MolnetzAWS10
Welcome to the lecture wiki Molekulare Netzwerke (A) WS 2010/2011 News Klausurergebnisse General Information SWS/credit hrs: 3, credits: 6 ECTS Lecturers ...
MolnetzAWS11
Welcome to the lecture wiki Molekulare Netzwerke (A) WS 2011/12 News Results Exam General Information SWS/credit hrs: 3, credits: 6 ECTS Lecturers: Alexander ...
MolnetzAWS13
Willkommen zum Vorlesungs Wiki Molekulare Netzwerke (A) WS 2012/2013 Aktuelles Results of the examination The second exam will be held on 11 April 2013, 10:15 11 ...
MolnetzAWS14
Willkommen zum Vorlesungs Wiki Molekulare Netzwerke (A) WS 2013/14 News A possible new slot for the lecture is Friday 10 12. If you are interested come by either ...
NetzWerkSS13
Welcome to the lectures wiki Netzwerkanalyse News The oral exams will be held on Friday, 12 July 2013 (see schedule below). For the first part, see the web ...
NetzWerkSS14
Welcome to the Lectures Wiki Netzwerkanalyse SS 2014 News Mündliche Prüfungen: Freitag, 18. Juli 2014, ab 8.00 Uhr, R 142, A6 (Dienstzimmer Bockmayr) ...
NetzWerkSS15
Welcome to the Lectures Wiki Netzwerkanalyse SS 2015 News Oral exams: Friday, 17 July 2015, 8 a.m. 2 p.m., R 142, A6 General Information SWS/credit hrs: ...
NetzWerkSS17
Welcome to the Lectures Wiki Netzwerkanalyse SS 2017 News The oral exams will take place on Thursday, 20 July 2017, and Friday, 21 July 2017 in room 142, Arnimallee ...
OptLecture11MaterialsWS15
Here is all the material for the lecture 11 * Download the slides * Recommended reading: article by Lustig/Puget (2001)
OptLecture11MaterialsWS16
Here is all the material for the lecture 11 * Download the slides * Recommended reading: article by Lustig/Puget (2001)
OptLecture12MaterialsWS15
Here is all the material for the lecture 12 * Download the slides
OptLecture12MaterialsWS16
Here is all the material for the lecture 12 * Download the slides
OptLecture13MaterialsWS15
Here is all the material for the lecture 13 * Download the slides * Recommended survey article
OptLecture13MaterialsWS16
Here is all the material for the lecture 13 * Download the slides * Recommended survey article
OptLecture14MaterialsWS15
Here is all the material for the lecture 14 * Download the slides * Recommended survey article
OptLecture14MaterialsWS16
Here is all the material for the lecture 14 * Download the slides * Recommended survey article
OptLecture15MaterialsWS15
Here is all the material for the lecture 15 * Download the slides * Additional material: Article Data
OptLecture15MaterialsWS16
Here is all the material for the lecture 15 * Download the slides * Additional material: Article Data
OptLecture1MaterialsWS15
Here is all the material for the lecture 1 * Download the slides * Additional material: Kolman/Beck, Linear programming, Chap.1.3 1.4 (click on pdf)
OptLecture1MaterialsWS16
Here is all the material for the lecture 1 * Download the slides * Additional material: Kolman/Beck, Linear programming, Chap.1.3 1.4 (click on pdf)
OptLecture2MaterialsWS15
Here is all the material for the lecture 2 * Download the slides
OptLecture2MaterialsWS16
Here is all the material for the lecture 2: * Download the slides Comments
OptLecture3MaterialsWS15
Here is all the material for the lecture 3 * Download the slides
OptLecture3MaterialsWS16
Here is all the material for the lecture 3 * Download the slides Comments
OptLecture4MaterialsWS15
Here is all the material for the lecture 4: * Download the slides
OptLecture4MaterialsWS16
Here is all the material for the lecture 4: * Download the slides Comments
OptiWS13
Lecture wiki moved to: Optimization
OptimizationWS15
Optimization (WiSe 2015) Welcome to the Wiki of the MSc lecture Optimization (VL: 19400701, UE: 19400702) General Information SWS: 2 2 ECTS: 6 Lecturers: Alexander ...
r36 - 24 Jan 2017 - 13:03 by AnnikaRoehl
OptimizationWS16
Optimization (WiSe 2016) Welcome to the Wiki of the MSc lecture Optimization (VL: 19400701, UE: 19400702) General Information SWS: 2 2 ECTS: 6 Lecturers: Alexander ...
OrgaWiki
Welcome to our Orga wiki (This page is under construction)
ProAnalysis
Wilkommen beim Wiki "Proseminar Analysis", SS 2012 Kontakt Heike Siebert Raum 101, Arnimallee 6 Sprechstunde (in der Vorlesungszeit): Mi 11:30 12:30 Ankündigungen ...
ProAnalysisSS15
Willkommen beim Wiki "Proseminar zur Analysis", SS 2015 Ankündigungen Allgemeine Information Im Proseminar werden wir uns mit Themen aus dem Bereich der mathematischen ...
ProAnalysisWS15
Willkommen beim Wiki "Proseminar zur Analysis", WS 2014/15 Ankündigungen Das Proseminar entfällt wegen zu geringer Teilnehmerzahl. Allgemeine Information ...
ProgrammingExerciseOptiWS13
Short Overview The practical exercises for the lecture Optimization won't be programming exercises. Mostly you have to get familiar with an LP Solver, try to solve ...
r7 - 19 Jan 2017 - 11:05 by AnnikaRoehl
ProgrammingExerciseOptiWS16
Short Overview The practical exercises for the lecture Optimization won't be programming exercises. Mostly you have to get familiar with an LP Solver, try to solve ...
r3 - 19 Jan 2017 - 11:06 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15
Aufgaben Hier findet ihr die Programmieraufgaben und evtl. zugehörige Materialien. Um den zip file mit den Netzwerken zu downloaden, klickt hier. Hier ein paar ...
r16 - 25 Apr 2016 - 12:11 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_1
Aufgabe 1: Flux Balance Analysis Deadline: Sonntag, 15.03.2015 Schreibe ein Programm, dass: * ein metabolisches Netzwerk einliest: Einen struct in einem .mat ...
NEW - 30 Mar 2015 - 13:08 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_1a
Aufgabe 1a: Blocked modus beschleunigen Deadline: Mittwoch, 25.03.2015 Versuche den Blocked Modus aus Programm 1 zu beschleunigen. Tip: Wenn ich über eine Reaktion ...
r2 - 28 May 2015 - 13:08 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_2
Aufgabe 2: Flux Coupling Analysis Deadline: Mittwoch, 25.03.2015 Schreibe ein Programm, dass: * ein metabolisches Netzwerk einliest: Einen struct in einem .mat ...
r2 - 07 Apr 2015 - 08:39 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_3
Aufgabe 3: Flux Variability Analysis Deadline: Mittwoch, 25.03.2015 Schreibe ein Programm, dass: * ein metabolisches Netzwerk einliest: Einen struct in einem ...
NEW - 30 Mar 2015 - 13:16 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_4_1
Aufgabe 4, Gruppe 1: Gemischt Ganzzahlige Optimierung (Mixed Integer Program) Deadline: Dienstag, 31.03.2015 Bereitet einen 45 minütigen Vortrag für Montag, den ...
NEW - 30 Mar 2015 - 13:18 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_4_2
Aufgabe 4, Gruppe 2: Berechnung Elementarer Flussmoden mithilfe des Algorithmus von de Figueiredo Deadline: Dienstag, 31.03.2015 Bereitet einen 45 minütigen Vortrag ...
r2 - 30 Mar 2015 - 15:05 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_5_1
Aufgabe 5, Gruppe 1 (Hanna und Micha): Berechnung der Elementaren Flussmoden Deadline: Mittwoch, 08.04.2015 Schreibe ein Programm, dass: * ein metabolisches Netzwerk ...
r4 - 07 Apr 2015 - 08:50 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_5_2
Aufgabe 5, Gruppe 2 (Melanie): Beschleunigung der FCA aus Aufgabe 3 Deadline: Mittwoch, 08.04.2015 Schreibe ein Programm, dass: * das das gleiche tut, wie das ...
r6 - 28 May 2015 - 13:09 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_5_3
Aufgabe 5, Gruppe 3 (Mathias): Erstellung von Hassediagrammen Deadline: Mittwoch, 08.04.2015 Schreibe ein Programm, dass: * das den Output der FCA benutzt und ...
r3 - 07 Apr 2015 - 08:49 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_5_4
Aufgabe 5, Gruppe 4 (Kateryna): Einlesen eines SBML Files Deadline: Mittwoch, 08.04.2015 Schreibe ein Programm, dass: * ein xml File einliest, welches im SBML ...
r4 - 07 Apr 2015 - 08:50 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_6_1
Aufgabe 6, Gruppe 1: Beschleunigung der Berechnung der elementaren Flussmoden Deadline: Mittwoch, 15.04.2015 Schreibe ein Programm, dass: * ein metabolisches Netzwerk ...
r3 - 28 May 2015 - 13:10 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_6_2
Aufgabe 6, Gruppe 2: Berechnung von essenziellen Reaktionen Deadline: Mittwoch, 15.04.2015 Schreibe ein Programm, dass: * ein metabolisches Netzwerk einliest: ...
r3 - 14 Apr 2015 - 09:09 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_6_3
Aufgabe 6, Gruppe 3: Toolbox zur Untersuchung von metabolischen Netzwerken Deadline: Mittwoch, 15.04.2015 Schreibe ein Programm, dass: * ein metabolisches Netzwerk ...
NEW - 09 Apr 2015 - 15:12 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_6_4
Aufgabe 6, Gruppe 4: Minimale Anzahl von Reaktionen, maximales Wachstum Deadline: Mittwoch, 15.04.2015 Schreibe ein Programm, dass: * ein metabolisches Netzwerk ...
NEW - 09 Apr 2015 - 15:07 by AnnikaRoehl
ProgrammingExerciseSoftwareSS15_7
Aufgabe 7: Kopplungen von Metaboliten Deadline: Mittwoch, 22.04.2015 Schreibe ein Programm, dass: * ein metabolisches Netzwerk einliest: Einen struct in einem ...
r2 - 16 Apr 2015 - 13:18 by AnnikaRoehl
ProgrammingExercisesWS15
General information for programming exercises * Please, fill in the names of your group members here, before the programming exercises start. * Each group gets ...
ResearchWiki
Welcome to our Research Wiki This page is still under construction.
RotBlau
Page RotBlau ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
SWP11Tests
Page SWP11Tests ((short description what this page is about)) Python Tests. * import subprocess * import networkx NuSMV Tests. * Anhang test_nusmv.smv ...
SoftSkillsErsti
Willkommen im Wiki der Soft Skills Projektgruppe "Einführungswoche für Erstsemesterstudierende der Bioinformatik" News 02.11.2010 Geiger: 2. November Beginn ...
SoftSkillsWS10
Welcome to the seminar wiki Soft Skills WS 2010/2011 News Die Projektabschlussvorträge finden am Dienstag, den 8. März 2011, von 8.30 12.30 Uhr in Raum 005 ...
SoftSkillsWS11
Welcome to the seminar wiki Soft Skills WS 2011/2012 News Die Projektabschlussvorträge finden am Freitag, den 24.2.2012, ab 9.30 Uhr in SR 108/09, A6, statt. ...
SoftSkillsWS13
Willkommen zum Soft Skills Wiki WS 2012/2013 Allgemeine Informationen Dozenten: Alexander Bockmayr, Heike Siebert Sprache: Deutsch Zeitraum: 15.10.2012 bis 16.02 ...
SoftWareProjectSS11
Welcome to the seminar wiki Projektmanagement im Softwarebereich: Regulatorische Netzwerke SS 2011 News 17.3.2011: Link to protected wiki: https://mathlife.mi.fu ...
SoftWareProjectSS12
Welcome to the seminar wiki Projektmanagement im Softwarebereich: Metabolische Netzwerke SS 2012 News Allgemeine Informationen SWS/credit hrs: 4 1 , credits: 10 ...
SoftWareProjectSS13
Welcome to the seminar wiki Projektmanagement im Softwarebereich: Metabolische Netzwerke SS 2013 News Allgemeine Informationen SWS/credit hrs: 4 1 , credits: 10 ...
SoftWareProjectSS14
Welcome to the Seminar Wiki Projektmanagement im Softwarebereich: Metabolische Netzwerke SS 2014 News Allgemeine Informationen SWS/credit hrs: 4 1 , credits: 10 ...
SoftWareProjectSS15
Welcome to the Seminar Wiki Projektmanagement im Softwarebereich: Metabolische Netzwerke SS 2015 News Am Dienstag den 26.05.2015 findet um 10:15 in 017/A6 der Abschlussvortrag ...
r21 - 07 Jul 2015 - 10:33 by AnnikaRoehl
SoftWareProjectSS16
Welcome to the Seminar Wiki Projektmanagement im Softwarebereich: Regulatorische Netzwerke SS 2016 News Präsentationen: Die Präsentationen finden am Montag, den ...
SoftWareProjectSS17
Kontaktadresse: Prof. Alexander Bockmayr Ling Sun Meeting time: date (dd.mm.yyyy); time, eg. 10 14, means we will start at 10:15. Classroom: by default, we will ...
SoftWareProjectSS19
* Softwarepraktikum_LAD19.pdf: Folien der Präsentation Softwarepraktikum "Logische Analyse von Daten"
Tba
Page Tba ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
TeachingWiki
Welcome to our Lectures Wiki Lectures Winter Term 2011/2012 * Discrete Mathematics for Bioinformatics (P1) * Molekulare Netzwerke (A) * Praktikum Seminar ...
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Welcome to the Mathlife Lectures Wiki The Mathematics in Life Sciences research group is working at the interface of mathematics and structural and systems biology ...
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Topic revision: r4 - 15 Nov 2006, ProjectContributor
 
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