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WebStatistics
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AlDaBiWS10Groups
Page AlDaBiWS10Groups Tragen Sie hier ihre Gruppe mit deren Teilnehmern (voller Name) ein. Zurück zur Veranstaltungsseite. Gruppen Gruppennr. Teilnehmer 1 ...
CalendarOrders
OUTDATED! Please use calendar orders at https://www.mi.fu berlin.de/w/Orga/CalendarOrders. Calendar Order Table Name DIN A 4, card board, 6 months on each side ...
BeamerCalendars
OUTDATED! Go to: https://wikis.fu berlin.de/display/abi/Beamer Beamer Calendars * Beamer Calendar General (beamer for lending/public use, if need be) * Beamer ...
OfficeEquipment
OUTDATED! Do not use. Office Furniture Hardware / Büroeinrichtung Technik Office Chairs / Bürostühle Room No. total number of chairs *how many are flawed ...
BeverageOrder
OUTDATED! Do not use. Page BeverageOrder We plan to regularly order beverages and others from https://www.durstexpress.de Please fill in your orders and give the ...
WebHome
Return to ABI Homepage DEPRECATED! Go to our new wiki: https://wikis.fu berlin.de/display/abi/ Available Wiki Pages Table of Contents (Z A) Teaching ...
LectureWiki
OUT OF USE! Go to: https://kvv.imp.fu berlin.de/portal/ * SS 2018 * PMSB SeqAn * SS 2017 * PMSB SeqAn * SS 2016 * Journal Club * Sequence ...
ReinertAppointment
OUTDATED! Go to: http://www.mi.fu berlin.de/en/inf/groups/abi/teaching/office hours/ if (window.location.search == "") document.write(' back'); else { var date ...
HowToImproveYourWriting
How To Improve Your Slides, Articles etc. This document aims to help to circumvent some pitfalls in data presentation and creating scientific articles and slides. ...
ThesesHome
Theses Page OUTDATED! Go to: https://kvv.imp.fu berlin.de/x/8RK4cp Available topics * If you are interested in doing your thesis in algorithmic bioinformatics ...
ThesisProposals
Thesis Proposals OUTDATED! Go to: https://kvv.imp.fu berlin.de/x/8RK4cp Here is the section for BSc and MSc students. At the beginning of the thesis the student and ...
CalenderOrders
Page CalendarOrders Calendar Order Table Name DIN A 4, card board, 6 months on each side large sized paper calendar, one year on one sheet (fits on door: 86x61 ...
OfficeChairs
Office Furniture Hardware / Büroeinrichtung Technik Office Chairs / Bürostühle Room No. total number of chairs how many are flawed/need replacement ...
EventLocations
Event Locations A selection of full service locations for meetings, conferences, retreats, and of places to go for lunch/dinner or special events. For the organization ...
FMTree
Improving Location Algorithms in FM indices Implementation of FMtrees A recently published paper improves the location time (retrieving positions in the text) for ...
SuffixArrayConstruction
Implementation of Suffix Array Construction Algorithms The SDSL (Succinct Data Structure Library) has various implementations of string indices based on suffix arrays ...
PMSB_Seqan_2018
Projektmanagement im Softwarebereich, SoSe 2018 Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" SeqAn für BSc Studenten. Alle Zeiten ...
LaganSeqan2018
LArge Genome AligNer (LAGAN) Hintergrund: Alignieren Genomischer Sequenzen Durch das vergleichen zweier Genome unterschiedlicher Organismen können neue Erkenntnisse ...
NEW - 13 Apr 2018 - 11:26 by jwinkler
StundenPlan
StundenPlan Reinert / Piro / Marsico SoSe 2017 time: Monday Tuesday Wednesday Thursday Friday 8 10 10 12 SeqAnalys (VL) 051/t9 ...
PSMB_Seqan_fft
Detection of homologous regions with FFT Given a set of sequences your task is to compute homologous segments for all pairs of the input set. The detection of homologous ...
r2 - 13 Feb 2018 - 15:00 by troja
PSMB_Seqan_IBF
Auswertugn von Binning directories mit Hilfe von Interleaved Bloom filters Hintergrund: Filtern von NGS reads in bins In dem projekt soll (zufällig generierte) ...
PSMB_Seqan_2016_p6
LArge Genome AligNer (LAGAN) Hintergrund: Alignieren Genomischer Sequenzen Durch das vergleichen zweier Genome unterschiedlicher Organismen können neue Erkenntnisse ...
PSMB_Seqan_MF
In this project a simple motif discovery algorithm should be implemented in SeqAn. Background The goal of motif finding is the detection of novel, unknown signals ...
PSMB_Seqan_2017_webassembly
PSMB_Seqan_2017_webassembly PMSB Project at the intersection of C , High performance computing and modern web technologies. Has the possibility to be continued as ...
BscKmerBinCounting
Implementing and evaluating different strategies to assign the set of k mers in a NGS sample to genomic bins Background For metagenomics read mapping it becomes more ...
BscRegionFilter
BscRegionFilter Possible Project for a BSc Thesis in Bioinformatics or Computer Science Introduction "Many nucleotide and amino acid sequences are highly repetitive ...
BscTreeBasedMapAlignment
BscTreeBasedMapAlignment B.Sc. topic proposal in high throughput proteomics Focus * Programming: ** * Math: ** * Biology: * Introduction LC MS data is ...
BscSeqAnAlphabetReduction
BscSeqAnAlphabetReduction ((short description what this page is about)) introduction "Research on the functional redundancy of amino acids dates back to ...
PSMB_Seqan_2017_p1
Assessment of off target effects of non coding RNAs Bioinformatics or computational biology is one of the fast growing and most exciting fields in science. Through ...
NEW - 08 Feb 2017 - 10:28 by kjk
PMSB_Seqan_2017
Projektmanagement im Softwarebereich, SoSe 2017 (19401511 (S) und 19401513 (P)) Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" SeqAn ...
OptimizationWS14
Optimization (WiSe 2014) Welcome to the Wiki of the MSc lecture Optimization (VL: 19400701, UE: 19400702) News * Results of 2nd exam are online General Information ...
r41 - 19 Jan 2017 - 11:02 by AnnikaRoehl
BscSeqAn010Seeds
Implementing 01*0 seed search strategy using the bidirectional FM index in SeqAn Background Approximate string matching is an important subtask in many bioinformatic ...
AlDaBiWS14
AlDaBi (WiSe 2014) Willkommen im Wiki der Vorlesung Algorithmen und Datenstrukturen für Bioinformatik (LV Nr. siehe Orte und Zeiten) Die Vorlesung hat 12 credits ...
PSMB_Seqan_2016_p3
PSMB_Seqan_2016_p3 Hintergrund Der erste Schritt ein einer Pipeline zur Analyse von Genomvarianten ist das Read Mapping. Dabei soll für jeden NGS Read eigentlich ...
PMSB_Seqan_2016
Projektmanagement im Softwarebereich, SoSe 2016 (19401511 (S) und 19401513 (P)) Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" SeqAn ...
JournalClubS16
Journal Club, SoSe 2016 (19402911, vormals 19401311) Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology ...
BscSeqAnOpenMSPeptideIndexer
Peptide Indexer using SeqAn and OpenMS Background In Proteomics one subtask for Peptide ID is to search peptide sequences in protein databases. This thesis shall ...
AlDaBiWS15Groups
Tragen Sie hier ihr Paar mit deren Teilnehmern (voller Name) ein. Zurück zum Praktikum oder zur Veranstaltungsseite. Paare Paarnr. Teilnehmer 1 Teilnehmer ...
r44 - 13 Mar 2016 - 00:33 by rrezart
RNA_Bioinformatics
RNA Bioinformatics (S) (19401111), SoSe 2016 Welcome to the Wiki of the seminar RNA Bioinformatics. PLEASE NOTE THAT WE WILL USE THE NEW KVV SYSTEM. CLICK HERE to ...
Sequence_analysis_2016
Sequence Analysis, SoSe 2016 *(LV Nr. 19401601 (V), 19401602 (Ü), 19401611 (S)) Welcome to the Wiki of Sequence Analysis. Dear Students. We will use for the lecture ...
TutorS
List of current tutors Summer Semester 2015 LV (Title) Tutor's Name Tutor's Email Supervisor (Prof/WiMi) ... ...
r11 - 22 Feb 2016 - 10:41 by thwelln31416
JournalClubW15
Journal Club (WiSe 2015) Welcome to the Wiki of the Journal Club (19402911) In this seminar we will present original work in Computational biology as well as progress ...
AlDaBiWS15Praktikum
AlDaBiWS15Praktikum Diese Seite behandelt das Praktikum zu Algorithmen und Datenstrukturen WS15. Übersicht Das Praktikum besteht aus: * Praktikumsvorlesung ...
r27 - 01 Feb 2016 - 14:55 by kjk
PSMB_Seqan_2016_p4
PSMB_Seqan_2016_p4 In this project you will implement the typical Needleman Wunsch Algorithm, but with a few twists that will hopefully allow "auto vectorization" ...
PSMB_Seqan_2016_p5
Add BAM support to SeqAn SequenceFile In this project you will be asked to write an interface that will help the Sequence IO of SeqAn to seamlessly read SAM/BAM files ...
r2 - 28 Jan 2016 - 16:35 by TemesgenDadi
PSMB_Seqan_2016_p2
Assessment of off target effects of non coding RNAs Bioinformatics or computational biology is one of the fast growing and most exciting fields in science. Through ...
r3 - 27 Jan 2016 - 18:16 by kjk
SeedingStrategies
Implementation and evaluation of index based seeding strategies in SeqAn Area Substring Indices, read mapping, local alignment, q mer indices Topic The goal of this ...
PSMB_Seqan_2016_p1
PSMB_Seqan_2016_p1 PMSB Project with possible Bachelor Project. Some experience with Javascript is required, some experience with C or C is recommended. Introduction ...
Lecture11MaterialsOptWS14
Here is all the material for the lecture 11 * Download the slides * Recommended reading: article by Lustig/Puget (2001)
AlDaBiWS15Tutorium
Page AlDaBiWS15Tutorium Tragen Sie sich bei Bedarf jeweils in der Woche vor dem Prakikumstutorium hier für ein Praktikumstutorium ein. Der Haupttermin für das Tutorium ...
r68 - 17 Jan 2016 - 17:42 by nilsj24
ProgrammingExercisesWS14
General information for programming exercises * Please note, that there will be an optional C crash course on Friday during the exercises. * Please, fill ...
r9 - 17 Dec 2015 - 17:08 by AnnikaRoehl
ProgrammingExerciseOptiWS13
Short Overview The practical exercises for the lecture Optimization won't be programming exercises. Mostly you have to get familiar with an LP Solver, try to solve ...
r11 - 17 Dec 2015 - 10:47 by AnnikaRoehl
OptimizationWS13
Page OptimizationWS13 Welcome to the Wiki of the MSc lecture Optimization (19182). News Update Klausurnoten Klausureinsicht 2. Prüfung : 30 April 2014, 9 ...
r38 - 09 Dec 2015 - 16:02 by AnnikaRoehl
TeilnehmerIn
TeilnehmerIn ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
NEW - 26 Oct 2015 - 11:37 by coombercel
GenomicsLecture1MaterialsWS13
GenomicsLecture1MaterialsWS13 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
NEW - 20 Oct 2015 - 10:44 by wangxuesong
AlDaBiWS15
AlDaBiWS15 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
NEW - 12 Oct 2015 - 13:52 by sandra48
BscSeqAnAppInBrowser
BscSeqAnAppInBrowser Possible Project for a BSc Thesis in Bioinformatics or Computer Science Introduction Since modern web browsers are used for all kinds of tasks ...
AlDaBiWS11Groups
Tragen Sie hier ihre Gruppe mit deren Teilnehmern (voller Name) ein. Zurück zur Veranstaltungsseite. Gruppen Gruppennr. Teilnehmer 1 Teilnehmer 2 Teilnehmer ...
JournalClubS15
Journal Club, SoSe 2015 (19401311) Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress ...
Sequence_analysis_2015
Sequence Analysis, SoSe 2015 (LV Nr. 19401601 (V), 19401602 (Ü), 19401611 (S)) Welcome to the Wiki of Sequence Analysis. This module consists of 2 hours lecture ...
SS15Lecture9Materials
Here is all the material for the lecture 12 * Download the script
SS15Lecture10Materials
Here is all the material for the lecture 12 * Download the script
SS13Lecture8Materials
Here is all the material for the lecture 6 * See last script
SS13Lecture7Materials
Here is all the material for the lecture 6 * Download the script
PMSB_Seqan_2013
Projektmanagement im Softwarebereich SeqAn 2013 Dies ist die Wiki Seite zum Praktikum Projektmanagement im Softwarebereich SeqAn. Alle Zeiten sind s.t. also wie ...
r47 - 11 May 2015 - 08:43 by kiekemo
AlgorithmsWS14
Algorithms (WiSe 2014) Welcome to the Wiki of the MSc lectures Algorithms (VL: 19400501, UE: 19400502) News * The results of the second exam are online ...
SS13Lecture3Materials
Here is all the material for the lecture 3 * Download the script.pdf * Watch a previous lecture as a video lower res or high res
PSMB_Seqan_2015_p3
PSMB_Seqan_2015_p3 Einleitung Eines der bekanntesten und meist genutzten Programme im Kontext der Bioinformatik ist NCBI Blast. Blast ist ein heuristisches Tool zum ...
SS13Lecture4Materials
Here is all the material for the lecture 4 * Download the script * exercise_4.pdf
SS13Lecture1Materials
Here is all the material for the lecture 1 * Download the script.pdf
PSMB_Seqan_2015_p4
PSMB_Seqan_2015_p4 Introduction Trypsin is a serine protease found in the digestive system of many vertebrates, where it hydrolyses proteins. It cleaves peptide chains ...
PMSB_Seqan_2015
Projektmanagement im Softwarebereich, SoSe 2015 (19401511 (S) und 19401513 (P)) Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" SeqAn ...
PSMB_Seqan_2015_p5
PSMB_Seqan_2015_p5 Introduction The q gram(k mer) Index in seqan allows looking up k mers over the index in constant time. However it has two limitations. The first ...
r12 - 26 Mar 2015 - 18:34 by cxpan
SIMDDpAlgo
SIMDDpAlgo SIMD extension of the standard DP algorithms in SeqAn Introduction Newer processors are shipped with 16 registers having an extended width of 128 bit ...
PSMB_Seqan_2015_p2
Page PSMB_Seqan_2015_p2 Hintergrund: Alignieren Genomischer Sequenzen Durch das vergleichen zweier Genome unterschiedlicher Organismen können neue Erkenntnisse bez ...
PSMB_Seqan_2015_palign
PSMB_Seqan_2015_palign Einleitung Paarweise Sequenzalignments liefern wertvolle biologische Informationen über die Identität zweier Sequenzen. Entsprechend ...
BscRawSeqJournaling
BscRawSeqJournaling BSc Thesis: Journaling raw sequences. Weekly Progress Introduction Nowadays sequencing technologies lead to a tremendous number of available ...
WeeklyWorkProgressBScJournalingRawSequences
WeeklyWorkProgressBScJournalingRawSequences Weekly Progress of the BSc Thesis: Journaling Raw Sequences Kick of Meeting ((content)) Week 1 ((content)) Comments ...
AlDaBiWS14Praktikum
AlDaBiWS14Praktikum Diese Seite behandelt das Praktikum zu Algorithmen und Datenstrukturen WS14 (hier geht es zur Vorlesungsseite). Übersicht Das Praktikum besteht ...
ProtLec12MaterialsWS14
Learning units Lecture slides Lecture slides (PPT) Lecture slides (PDF) Exercises Videos
Lecture15MaterialsOptWS14
Here is all the material for the lecture 15 * Download the slides * Additional material: Article Data
Lecture15MaterialsOptWS12
Here is all the material for the lecture 15 * Download the slides * Additional material: Article Data
Lecture14MaterialsOptWS14
Here is all the material for the lecture 14 * Download the slides * Recommended survey article
ProteomicsVL_WS14
Forschungsmodul: Proteomics VL UE (WiSe 2014) Welcome to the Wiki of the MSc lecture Proteomics (VL: 19400901, UE: 19400902) In this lecture we will cover the basics ...
r17 - 03 Feb 2015 - 15:53 by jpfeuffer
AlDaBiWS14CodeReview
Page AlDaBiWS14CodeReview Tragen Sie hier Ihre Gruppe für einen Time Slot des Code Reviews ein. Es gibt 2 parallele Time slots. Jede Gruppe trägt sich nur in eine ...
AProtLec8MaterialsWS14
Learning units Learning unit 8A/B to De novo peptide identification and algorithmic concepts Learning unit 8C to De novo ID with Antilope Learning unit 8D to Complementary ...
r3 - 02 Feb 2015 - 10:09 by jpfeuffer
Lecture13MaterialsOptWS14
Here is all the material for the lecture 13 * Download the slides * Recommended survey article
JournalClubWS14
Journal Club (WiSe 2014) Welcome to the Wiki of the Journal Club (19401311) In this seminar we will present original work in Computational biology as well as progress ...
HiddenMarkovModelsWS14
Page HiddenMarkovModelsWS14 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: * script.pdf: script.pdf * slides.pdf: slides.pdf Inhalt ...
r3 - 29 Jan 2015 - 13:08 by denisethiel
Lecture12MaterialsOptWS14
Here is all the material for the lecture 12 * Download the slides
ProtLec11MaterialsWS14
Learning units Learning unit 11A to Metabolomics and Metabolites Learning unit 11B to Metabolite Databases Learning unit 11C to Metabolite ID via Spectral Matching ...
ProtLec10MaterialsWS14
Learning units Learning unit 10A to Protein post translational modifications Learning unit 10B to Exptl. techniques for phosphoproteomics Learning unit 10C to Algorithms ...
AlDaBiWS14Groups
Tragen Sie hier ihre Gruppe mit deren Teilnehmern (voller Name) ein. Zurück zum Praktikum oder zur Veranstaltungsseite. Gruppen Gruppennr. Teilnehmer 1 Teilnehmer ...
r33 - 18 Jan 2015 - 19:52 by damazein
Lecture10MaterialsOptWS14
Below you find material for the lecture: * script : rna_lagrange,lara2.pdf.gz
Lecture9MaterialsOptWS14
Below you find material for the lecture: * script : lagrange.pdf * chapter_lagrange.pdf
FormalLanguagesWS14
Page FormalLanguagesWS14 Vorlesung Skript: script Videos: Hier das Vorlesungsvideo aus 2012. Inhalt Datei Material zehnte Übung A10.pdf elfte ...
r3 - 15 Jan 2015 - 13:38 by denisethiel
ProtLec9MaterialsWS14
Learning units Learning unit 9A to Protein inference problem Learning unit 9B to ProteinProphet Learning unit 9C to Protein FDR estimates Lecture slides Lecture ...
r5 - 12 Jan 2015 - 15:24 by XiaoLiang
Lecture8MaterialsOptWS14
for the script see lecture 5.
Lecture7MaterialsOptWS14
for the script see lecture 5.
Lecture6MaterialsOptWS14
for the script see lecture 5.
Lecture5MaterialsOptWS14
Below you find material for the lecture: * script : combopt.pdf
MultipleAlignmentWS14
Page MultipleAlignmentWS14 Vorlesung Skript: * script Videos: Hier das Vorlesungsvideo aus 2012 zu TCoffee. Inhalt Datei Material achte Übung A8 ...
r3 - 18 Dec 2014 - 14:22 by denisethiel
Lecture4MaterialsOptWS14
Here is all the material for the lecture 4 * Download the slides
Lecture3MaterialsOptWS14
Here is all the material for the lecture 3 * Download the slides
Lecture2MaterialsOptWS14
Here is all the material for the lecture 2 * Download the slides
ProtLec7MaterialsWS14
Learning units Learning unit 7A to Peptide database search Learning unit 7B to Tools for database earch (Tool) Learning unit 7C to FDR estimation Learning unit 7D ...
r5 - 10 Dec 2014 - 15:13 by XiaoLiang
ProtLec6MaterialsWS14
Learning units Learning unit 6A to SRM/MRM Learning unit 6B to MRM and Skyline (Tool) Learning unit 6C to SWATH and OpenSWATH (Tool) Lecture slides Lecture slides ...
r5 - 10 Dec 2014 - 14:15 by XiaoLiang
Lecture1MaterialsOptWS14
Here is all the material for the lecture 1 * Download the slides * Additional material: Kolman/Beck, Linear programming, Chap.1.3 1.4 (click on pdf)
AlignmentHeuristicsWS14
Page AlignmentHeuristicsWS14 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: * fasta * blast * quasar Videos: Hier das Vorlesungsvideo ...
r6 - 04 Dec 2014 - 13:19 by denisethiel
AlgLecture15MaterialsWS14
Here is all the material for the lecture 15 * Download the slides
AlgLecture14MaterialsWS14
Here is all the material for the lecture 14 * Download the slides
AlgLecture13MaterialsWS14
Here is all the material for the lecture 13 * Download the slides * Additional material 1 : Turing machines as enumerators * Additional material 2 : Undecidable ...
ProtLec5MaterialsWS14
Learning units Learning unit 5A to Label free quantification Learning unit 5B to Map alignment Learning unit 5C to SILAC quantification Lecture slides Lecture slides ...
r5 - 26 Nov 2014 - 11:15 by XiaoLiang
AlgorithmsProgrammingCodeReview
The code review takes place on the 28th of November in room 020 in the Takustraße 9. Please, fill in the group number into your desired time slot. Back to programming ...
r10 - 24 Nov 2014 - 19:15 by ziska
AlgLecture12MaterialsWS14
Here is all the material for the lecture 12 * Download the slides * Video on Alan Turing
ProtLec4MaterialsWS14
Learning units Learning unit 4A to Basic Analytical Chemistry Learning unit 4B to Quantification strategies (SWATH, TMT, MRM/AQUA, ... ) Learning unit 4C to Isobaric ...
r3 - 19 Nov 2014 - 19:16 by jpfeuffer
SequenceAlignmentWS14
Page SequenceAlignmentWS14 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: * alignment.pdf Videos: Video 3 ist defekt. Hier das Vorlesungsvideo ...
BiBWTApps
MSc Thesis The birectional BWT and its applications Topic TODO Journal * 2014 09 15: I read up on templates, forked the official seqan repository, set Eclipse ...
AlgLecture10MaterialsWS14
Here is all the material for the third block (lectures 10 and 11). * Download the lecture notes
ProtLec3MaterialsWS14
Learning units Learning unit 3A to Basic Statistics Learning unit 3B to Mixture Models and EM Algorithm Lecture slides Lecture slides (PPT) Lecture slides (PDF ...
r5 - 11 Nov 2014 - 15:24 by XiaoLiang
ProtLec2MaterialsWS14
Learning units Learning unit 2A to Chromatography (updated) Learning unit 2B to Mass spectrometry Lecture slides Lecture slides Exercises Exercises about separation ...
r6 - 06 Nov 2014 - 11:40 by jpfeuffer
AlgLecture8MaterialsWS14
Here is all the material for the third block (lectures 8 and 9). * Download the lecture notes
AlgLecture7MaterialsWS14
AlgLecture7MaterialsWS14 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
AlgLecture6MaterialsWS14
Here is all the material for the third block (lectures 6 and 7). * Download the lecture notes
AlgLecture4MaterialsWS14
Here is all the material for Lecture 4 * Download slides * Download lecture notes by A. Schrijver, CWI Amsterdam (Chap.4.2 4.4) * Some history
AlDaBiWS14Tutorium
Page AlDaBiWS14Tutorium Tragen Sie bei Bedarf hier für ein Praktikumstutorium ein. Der Termin 14 16 Uhr ist als Backup gedacht, wenn zum Termin 12 14 Uhr kein Platz ...
r39 - 28 Oct 2014 - 08:36 by danielseeler
AlgLecture5MaterialsWS14
Here is all the material for Lecture 5 * Download slides * Download lecture notes by A. Schrijver, CWI Amsterdam (Chap.3.1,3.2,3.4)
ProtLec1MaterialsWS14
Learning units Learning unit 1A to Introduction to Proteomics and Metabolomics Learning unit 1B to Overview of separation techniques Learning unit 1C to Introduction ...
r9 - 24 Oct 2014 - 13:27 by XiaoLiang
AlgorithmsProgrammingExerciseWS14
Please, fill in the names of your group members (given name and surname). Back to programming wiki or to lecture wiki. Gruppen Group No. Member 1 Member 2 ...
ExactMatchingWS14
Page ExactMatchingWS14 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: exact.pdf Video: Hier das Vorlesungsvideo 1 aus 2012. Hier das Vorlesungsvideo ...
r9 - 23 Oct 2014 - 10:16 by denisethiel
ProtLec0MaterialsWS14
Learning units No learning units for the introductory lecture. Please see the materials for Lecture 1 for the first units. Lectures 00_CPM_WS14_Introduction 00_CPM ...
r7 - 21 Oct 2014 - 13:14 by jpfeuffer
ResearchLogs
Research Logs * Genome Comparison (Birte Kehr, Manuel Holtgrewe) * Precursor Selection (Alexandra Zerck) * Indices and Applications (David Weese) * BWTIndex ...
r8 - 20 Oct 2014 - 14:16 by cxpan
AlgLecture3MaterialsWS14
Here is all the material for Lecture 3 * Download slides * Download lecture notes by A. Schrijver, CWI Amsterdam (Chap.1.1 1.3)
AlDaBiWS13Groups
Tragen Sie hier ihre Gruppe mit deren Teilnehmern (voller Name) ein. Zurück zum Praktikum oder zur Veranstaltungsseite. Gruppen Gruppennr. Teilnehmer 1 Teilnehmer ...
r35 - 14 Oct 2014 - 09:55 by celine4
AlgLecture1MaterialsWS14
Here is all the material for the first block (lectures 1 and 2). * Download the lecture notes * Chapter of Motwani book * Review paper by Karp: Randomized ...
AlgLecture2MaterialsWS14
For the script see lecture 1.
ExactMatchingWS13
Page ExactMatchingWS13 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: exact.pdf Video: Hier das Vorlesungsvideo 1 aus 2012. Hier das Vorlesungsvideo ...
DeepCoffee
Extending SeqAn::TCoffe for deep alignments Area Mulitple Sequence Alignment Topic tbd. Timeline References 1. Rausch, T, Sergey Koren, Gennady Denisov, David ...
BscPlagiarismApp
Implementation of an IOS app to compare documents and visualize common paragraphs using a local alignment software. Background The goal of this thesis is to adapt ...
JournalClubSS14
Journal Club, SoSe 2014 (19576b) Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress ...
Sequence_analysis_2014
Sequence Analysis, SoSe 2014 (LV Nr. 19716, 19716a, 19716b) Welcome to the Wiki of Sequence Analysis. This module consists of 2 hours lecture, 2 hours exercise ...
SS13Lecture10Materials
Here is all the material for the lecture 10 * Download the script
Genomics14
Genomics (WiSe 2014) Welcome to the Wiki of the MSc lecture Genomics (CUB848/CUB849). News * (...) General Information SWS: 2 2 ECTS: Lecturer: Peter Robinson ...
AlgorithmsWS13
Page AlgorithmsWS13 Welcome to the Wiki of the MSc lectures Algorithms (19712) News Klausureinsicht 2. Prüfung : 30 April 2014, 9 10h, T9, R012 Nachklausur ...
SS14Lecture11Materials
Here is all the material for the lecture 7 and 8 * Download the script:
SS13Lecture5Materials
Here is all the material for the lecture 5 and 6 * Download the script
SS13Lecture6Materials
Here is all the material for the lecture 6 * Download the script
AlDaBiWS13
Page AlDaBiWS13 Willkommen im Wiki der Vorlesung Algorithmen und Datenstrukturen für Bioinformatik (19700) Die Vorlesung hat 12 credits, davon zählen 6 credits auf ...
PSMB_Seqan_2014_large_insertd
PSMB_Seqan_2014_large_insertd Hintergrund Lange Sequenzstücke, die im Donor aber nicht in der Referenz enthalten sind, lassen sich nur schwer mit einzelnen Reads ...
r6 - 12 May 2014 - 06:59 by jobau
ProteomicS_SS14
Proteomics, SoSe 2014 (19577) Welcome to the Wiki of the MSc seminar Proteomics. In this seminar we will discuss original articles that deal with the analysis of HPLC ...
PMSB_Seqan_2014
Projektmanagement im Softwarebereich, SoSe 2014 (19588a und 19588b) * Einführung in Software Engineering am Freitag entfällt leider! Dies ist die Wiki Seite ...
PSMB_Seqan_2014_mapper
PSMB_Seqan_2014_mapper Hintergrund Der erste Schritt ein einer Pipeline zur Analyse von Genomvarianten ist das Read Mapping. Dabei soll für jeden NGS Read eigentlich ...
PSMB_Seqan_2014_small_indels
PSMB_Seqan_2014_small_indels Hintergrund Neben SNPs sind kleine Insertionen und Deletionen (indels) eine Klasse wichtiger genomischer Varianten. Für die Suche solcher ...
LeckerSchmecker
Restaurant Recommendations A collection of restaurant recommendations. You are welcome to add more recommendations. * See also: Restaurants Cafés in Event Locations ...
PSMB_Seqan_2014_SNP_caller
PSMB_Seqan_2014_SNP_caller Hintergrund Die häufigste und kleinste mögliche genomische Variation ist der Single Nucleotide Polymorphism. Nach dem Mapping von Reads ...
ResearchLogTemesgenDadi18032014
Meeting/Consultation minute 18 03 2014 Discussed Topics: * Genovo: Genovo is written in C . * Other metagenomic assemblers: Metavelvet, an extension of ...
NEW - 20 Mar 2014 - 08:12 by TemesgenDadi
ResearchLogTemesgenDadi
Metagenomics. Background Metagenomics is the study of genetic material (metagenome) recovered directly from environmental samples. In these environmental samples ...
r3 - 20 Mar 2014 - 08:12 by TemesgenDadi
PSMB_Seqan_2014_overview
PSMB_Seqan_2014_overview Im PSMB SeqAn 2014 geht es darum, eine einfach Pipeline zur Variantenanalyse aufzubauen. Hintergrund Insbesondere für das menschliche Genom ...
Genomics13
Page Genomics13 Welcome to the Wiki of the MSc lecture Genomics (19711 CUB848/CUB849). News Nachklausur: : The 2nd exam will be oral. It will be on April 1st ...
WebPreferences
ABI Web Preferences The following settings are web preferences of the ABI web. These preferences overwrite the site level preferences in . and , and can be ...
AlDaBiWS13Praktikum
AlDaBiWS13Praktikum Diese Seite behandelt das Praktikum zu Algorithmen und Datenstrukturen WS13 (hier geht es zur Vorlesungsseite). Übersicht Das Praktikum besteht ...
r31 - 04 Mar 2014 - 10:29 by mauli87
AlDaBiWS12
Page AlDaBiWS12 Willkommen im Wiki der Vorlesung "Algorithmen und Datenstrukturen für Bioinformatik" Nachrichten * 16.04.2013: Die Klausurergebnisse der 2. Klausur ...
JournalClubWS13
Page JournalClubWS13 Welcome to the Wiki of the Journal Club (19576b) In this seminar we will present original work in Computational biology as well as progress reports ...
r22 - 07 Feb 2014 - 12:50 by TemesgenDadi
BScParallelBamIOScheduleProject
BScParallelBamIOScheduleProject Implementation of parallel de /compression of BAM files Project Schedule Tasks 1) Extract the compression and decompression into ...
r8 - 05 Feb 2014 - 06:16 by olfrik
AlDaBiWS13CodeReview
Page AlDaBiWS13CodeReview Tragen Sie hier Ihre Gruppe für einen Time Slot des Code Reviews ein. Stellen Sie sich darauf ein, den Code den ihre Gruppe abgegeben hat ...
r22 - 03 Feb 2014 - 21:32 by jdf
Lecture13MaterialsOptWS13
Below you find material for the lecture: * script : CP IP.pdf:
NEW - 30 Jan 2014 - 15:44 by anduryl
Lecture12MaterialsOptWS13
Below you find material for the lecture: * script : CP2.pdf:
NEW - 30 Jan 2014 - 15:43 by anduryl
Lecture11MaterialsOptWS13
Below you find material for the lecture: * script : CP1.pdf:
NEW - 30 Jan 2014 - 15:43 by anduryl
HiddenMarkovModelsWS13
Page HiddenMarkovModelsWS13 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: * script.pdf: script.pdf Übungen: Inhalt Datei Material ...
r2 - 30 Jan 2014 - 15:03 by thwelln31416
ResearchLogOliverStolpe
ResearchLogOliverStolpe ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
NEW - 28 Jan 2014 - 14:45 by OliverStolpe
FormalLanguagesWS13
Page FormalLanguagesWS13 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: * languages.pdf Videos: * Vorlesungsvideo Formale Sprachen ...
r2 - 23 Jan 2014 - 12:43 by thwelln31416
Lecture10MaterialsOptWS13
Below you find material for the lecture: * script : rna_lagrange,lara2.pdf.gz
Lecture9MaterialsOptWS13
Below you find material for the lecture: * script : lagrange.pdf * chapter_lagrange.pdf
Lecture8MaterialsOptWS13
Below you find material for the lecture: * script : siehe lecture 1
MultipleAlignmentWS13
Page MultipleAlignmentWS13 Vorlesung Skript: * multal1.pdf: multal1.pdf * multal2.pdf: multal2.pdf Videos: Übungen: Inhalt Datei Material Achter ...
r6 - 16 Jan 2014 - 10:16 by thwelln31416
AlignmentHeuristicsWS13
Page AlignmentHeuristicsWS13 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: * fasta.pdf * blast.pdf * quasar.pdf Videos: * Vorlesungsvideo ...
r6 - 15 Jan 2014 - 12:07 by thwelln31416
Lecture5MaterialsOptWS13
Below you find material for the lecture: * script : combopt.pdf:
Lecture7MaterialsOptWS13
Below you find material for the lecture: * script : siehe lecture 1
Lecture6MaterialsOptWS13
Below you find material for the lecture: * script : siehe lecture 1
GenomicsLecture10MaterialsWS13
GenomicsLecture10MaterialsWS13 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
NEW - 11 Jan 2014 - 13:32 by hamid24
AlDaBiWS13Tutorium
Page AlDaBiWS13Tutorium Tragen Sie bei Bedarf hier für ein Praktikumstutorium ein. Der Termin 14 16 Uhr ist als Backup gedacht, wenn zum Termin 12 14 Uhr kein Platz ...
r27 - 20 Dec 2013 - 20:49 by hayko1991
Lecture2MaterialsOptWS13
Lecture2MaterialsOptWS13 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments Hafiz Muhammad Hamid Main.hamid24 ...
NEW - 18 Dec 2013 - 18:36 by hamid24
ProgrammingExerciseOptiWS12
General information for programming exercises * We will continue working in the repository from the Algorithms lecture. To discriminate the exercise files we append ...
r12 - 10 Dec 2013 - 13:35 by AnnikaRoehl
Lecture1MaterialsOptWS13
Here is all the material for the lecture unit 1, lecture 1 * Download the script
NEW - 09 Dec 2013 - 15:48 by anduryl
AlgLecture15MaterialsWS13
Here are the notes about polynomial reductions, NP, NP completeness and some examples. * Download the lecture notes
NEW - 03 Dec 2013 - 15:37 by anduryl
AlgLecture14MaterialsWS13
Here are the materials for turing machines pt. 2 definition of run time analysis. * Download the lecture notes
NEW - 03 Dec 2013 - 15:36 by anduryl
GenomicsLecture6MaterialsWS13
Here is all the material for the lecture * Download the script
GenomicsLecture7MaterialsWS13
Slides for Variant Calling 21: available from https://compbio.charite.de/contao/index.php/genomics.html
r2 - 29 Nov 2013 - 14:22 by probins
AlignmentHeuristicsWS12
Page AlignmentHeuristicsWS12 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: * fasta.pdf * blast filtering.pdf * quasar.pdf Videos ...
BScDataStructureSV
BScDataStructureSV SNP efficient Journal Strings Einleitung In den letzten 10 Jahren hat sich die Technologie zur Sequenzierung der DNS von Organismen kolossal verbessert ...
AlgLecture13MaterialsWS13
Here is all the material for turing machines pt. 1. * Download the lecture notes
NEW - 25 Nov 2013 - 10:41 by anduryl
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