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100 recent changes in ABI Web retrieved at 20:47 (GMT)

WebStatistics
Statistics for ABI Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads: ...
AlDaBiWS10Groups
Page AlDaBiWS10Groups Tragen Sie hier ihre Gruppe mit deren Teilnehmern (voller Name) ein. Zurück zur Veranstaltungsseite. Gruppen Gruppennr. Teilnehmer 1 ...
CalendarOrders
OUTDATED! Please use calendar orders at https://www.mi.fu berlin.de/w/Orga/CalendarOrders. Calendar Order Table Name DIN A 4, card board, 6 months on each side ...
BeamerCalendars
OUTDATED! Go to: https://wikis.fu berlin.de/display/abi/Beamer Beamer Calendars * Beamer Calendar General (beamer for lending/public use, if need be) * Beamer ...
OfficeEquipment
OUTDATED! Do not use. Office Furniture Hardware / Büroeinrichtung Technik Office Chairs / Bürostühle Room No. total number of chairs *how many are flawed ...
BeverageOrder
OUTDATED! Do not use. Page BeverageOrder We plan to regularly order beverages and others from https://www.durstexpress.de Please fill in your orders and give the ...
WebHome
Return to ABI Homepage DEPRECATED! Go to our new wiki: https://wikis.fu berlin.de/display/abi/ Available Wiki Pages Table of Contents (Z A) Teaching ...
LectureWiki
OUT OF USE! Go to: https://kvv.imp.fu berlin.de/portal/ * SS 2018 * PMSB SeqAn * SS 2017 * PMSB SeqAn * SS 2016 * Journal Club * Sequence ...
ReinertAppointment
OUTDATED! Go to: http://www.mi.fu berlin.de/en/inf/groups/abi/teaching/office hours/ if (window.location.search == "") document.write(' back'); else { var date ...
HowToImproveYourWriting
How To Improve Your Slides, Articles etc. This document aims to help to circumvent some pitfalls in data presentation and creating scientific articles and slides. ...
ThesesHome
Theses Page OUTDATED! Go to: https://kvv.imp.fu berlin.de/x/8RK4cp Available topics * If you are interested in doing your thesis in algorithmic bioinformatics ...
ThesisProposals
Thesis Proposals OUTDATED! Go to: https://kvv.imp.fu berlin.de/x/8RK4cp Here is the section for BSc and MSc students. At the beginning of the thesis the student and ...
CalenderOrders
Page CalendarOrders Calendar Order Table Name DIN A 4, card board, 6 months on each side large sized paper calendar, one year on one sheet (fits on door: 86x61 ...
OfficeChairs
Office Furniture Hardware / Büroeinrichtung Technik Office Chairs / Bürostühle Room No. total number of chairs how many are flawed/need replacement ...
EventLocations
Event Locations A selection of full service locations for meetings, conferences, retreats, and of places to go for lunch/dinner or special events. For the organization ...
FMTree
Improving Location Algorithms in FM indices Implementation of FMtrees A recently published paper improves the location time (retrieving positions in the text) for ...
SuffixArrayConstruction
Implementation of Suffix Array Construction Algorithms The SDSL (Succinct Data Structure Library) has various implementations of string indices based on suffix arrays ...
PMSB_Seqan_2018
Projektmanagement im Softwarebereich, SoSe 2018 Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" SeqAn für BSc Studenten. Alle Zeiten ...
LaganSeqan2018
LArge Genome AligNer (LAGAN) Hintergrund: Alignieren Genomischer Sequenzen Durch das vergleichen zweier Genome unterschiedlicher Organismen können neue Erkenntnisse ...
NEW - 13 Apr 2018 - 11:26 by jwinkler
StundenPlan
StundenPlan Reinert / Piro / Marsico SoSe 2017 time: Monday Tuesday Wednesday Thursday Friday 8 10 10 12 SeqAnalys (VL) 051/t9 ...
PSMB_Seqan_fft
Detection of homologous regions with FFT Given a set of sequences your task is to compute homologous segments for all pairs of the input set. The detection of homologous ...
r2 - 13 Feb 2018 - 15:00 by troja
PSMB_Seqan_IBF
Auswertugn von Binning directories mit Hilfe von Interleaved Bloom filters Hintergrund: Filtern von NGS reads in bins In dem projekt soll (zufällig generierte) ...
PSMB_Seqan_2016_p6
LArge Genome AligNer (LAGAN) Hintergrund: Alignieren Genomischer Sequenzen Durch das vergleichen zweier Genome unterschiedlicher Organismen können neue Erkenntnisse ...
PSMB_Seqan_MF
In this project a simple motif discovery algorithm should be implemented in SeqAn. Background The goal of motif finding is the detection of novel, unknown signals ...
PSMB_Seqan_2017_webassembly
PSMB_Seqan_2017_webassembly PMSB Project at the intersection of C , High performance computing and modern web technologies. Has the possibility to be continued as ...
BscKmerBinCounting
Implementing and evaluating different strategies to assign the set of k mers in a NGS sample to genomic bins Background For metagenomics read mapping it becomes more ...
BscRegionFilter
BscRegionFilter Possible Project for a BSc Thesis in Bioinformatics or Computer Science Introduction "Many nucleotide and amino acid sequences are highly repetitive ...
BscTreeBasedMapAlignment
BscTreeBasedMapAlignment B.Sc. topic proposal in high throughput proteomics Focus * Programming: ** * Math: ** * Biology: * Introduction LC MS data is ...
BscSeqAnAlphabetReduction
BscSeqAnAlphabetReduction ((short description what this page is about)) introduction "Research on the functional redundancy of amino acids dates back to ...
PSMB_Seqan_2017_p1
Assessment of off target effects of non coding RNAs Bioinformatics or computational biology is one of the fast growing and most exciting fields in science. Through ...
NEW - 08 Feb 2017 - 10:28 by kjk
PMSB_Seqan_2017
Projektmanagement im Softwarebereich, SoSe 2017 (19401511 (S) und 19401513 (P)) Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" SeqAn ...
OptimizationWS14
Optimization (WiSe 2014) Welcome to the Wiki of the MSc lecture Optimization (VL: 19400701, UE: 19400702) News * Results of 2nd exam are online General Information ...
r41 - 19 Jan 2017 - 11:02 by AnnikaRoehl
BscSeqAn010Seeds
Implementing 01*0 seed search strategy using the bidirectional FM index in SeqAn Background Approximate string matching is an important subtask in many bioinformatic ...
AlDaBiWS14
AlDaBi (WiSe 2014) Willkommen im Wiki der Vorlesung Algorithmen und Datenstrukturen für Bioinformatik (LV Nr. siehe Orte und Zeiten) Die Vorlesung hat 12 credits ...
PSMB_Seqan_2016_p3
PSMB_Seqan_2016_p3 Hintergrund Der erste Schritt ein einer Pipeline zur Analyse von Genomvarianten ist das Read Mapping. Dabei soll für jeden NGS Read eigentlich ...
PMSB_Seqan_2016
Projektmanagement im Softwarebereich, SoSe 2016 (19401511 (S) und 19401513 (P)) Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" SeqAn ...
JournalClubS16
Journal Club, SoSe 2016 (19402911, vormals 19401311) Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology ...
BscSeqAnOpenMSPeptideIndexer
Peptide Indexer using SeqAn and OpenMS Background In Proteomics one subtask for Peptide ID is to search peptide sequences in protein databases. This thesis shall ...
AlDaBiWS15Groups
Tragen Sie hier ihr Paar mit deren Teilnehmern (voller Name) ein. Zurück zum Praktikum oder zur Veranstaltungsseite. Paare Paarnr. Teilnehmer 1 Teilnehmer ...
r44 - 13 Mar 2016 - 00:33 by rrezart
RNA_Bioinformatics
RNA Bioinformatics (S) (19401111), SoSe 2016 Welcome to the Wiki of the seminar RNA Bioinformatics. PLEASE NOTE THAT WE WILL USE THE NEW KVV SYSTEM. CLICK HERE to ...
Sequence_analysis_2016
Sequence Analysis, SoSe 2016 *(LV Nr. 19401601 (V), 19401602 (Ü), 19401611 (S)) Welcome to the Wiki of Sequence Analysis. Dear Students. We will use for the lecture ...
TutorS
List of current tutors Summer Semester 2015 LV (Title) Tutor's Name Tutor's Email Supervisor (Prof/WiMi) ... ...
r11 - 22 Feb 2016 - 10:41 by thwelln31416
JournalClubW15
Journal Club (WiSe 2015) Welcome to the Wiki of the Journal Club (19402911) In this seminar we will present original work in Computational biology as well as progress ...
AlDaBiWS15Praktikum
AlDaBiWS15Praktikum Diese Seite behandelt das Praktikum zu Algorithmen und Datenstrukturen WS15. Übersicht Das Praktikum besteht aus: * Praktikumsvorlesung ...
r27 - 01 Feb 2016 - 14:55 by kjk
PSMB_Seqan_2016_p4
PSMB_Seqan_2016_p4 In this project you will implement the typical Needleman Wunsch Algorithm, but with a few twists that will hopefully allow "auto vectorization" ...
PSMB_Seqan_2016_p5
Add BAM support to SeqAn SequenceFile In this project you will be asked to write an interface that will help the Sequence IO of SeqAn to seamlessly read SAM/BAM files ...
r2 - 28 Jan 2016 - 16:35 by TemesgenDadi
PSMB_Seqan_2016_p2
Assessment of off target effects of non coding RNAs Bioinformatics or computational biology is one of the fast growing and most exciting fields in science. Through ...
r3 - 27 Jan 2016 - 18:16 by kjk
SeedingStrategies
Implementation and evaluation of index based seeding strategies in SeqAn Area Substring Indices, read mapping, local alignment, q mer indices Topic The goal of this ...
PSMB_Seqan_2016_p1
PSMB_Seqan_2016_p1 PMSB Project with possible Bachelor Project. Some experience with Javascript is required, some experience with C or C is recommended. Introduction ...
Lecture11MaterialsOptWS14
Here is all the material for the lecture 11 * Download the slides * Recommended reading: article by Lustig/Puget (2001)
AlDaBiWS15Tutorium
Page AlDaBiWS15Tutorium Tragen Sie sich bei Bedarf jeweils in der Woche vor dem Prakikumstutorium hier für ein Praktikumstutorium ein. Der Haupttermin für das Tutorium ...
r68 - 17 Jan 2016 - 17:42 by nilsj24
ProgrammingExercisesWS14
General information for programming exercises * Please note, that there will be an optional C crash course on Friday during the exercises. * Please, fill ...
r9 - 17 Dec 2015 - 17:08 by AnnikaRoehl
ProgrammingExerciseOptiWS13
Short Overview The practical exercises for the lecture Optimization won't be programming exercises. Mostly you have to get familiar with an LP Solver, try to solve ...
r11 - 17 Dec 2015 - 10:47 by AnnikaRoehl
OptimizationWS13
Page OptimizationWS13 Welcome to the Wiki of the MSc lecture Optimization (19182). News Update Klausurnoten Klausureinsicht 2. Prüfung : 30 April 2014, 9 ...
r38 - 09 Dec 2015 - 16:02 by AnnikaRoehl
TeilnehmerIn
TeilnehmerIn ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
NEW - 26 Oct 2015 - 11:37 by coombercel
GenomicsLecture1MaterialsWS13
GenomicsLecture1MaterialsWS13 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
NEW - 20 Oct 2015 - 10:44 by wangxuesong
AlDaBiWS15
AlDaBiWS15 ((short description what this page is about)) Section 1 ((content)) Section 2 ((content)) Comments
NEW - 12 Oct 2015 - 13:52 by sandra48
BscSeqAnAppInBrowser
BscSeqAnAppInBrowser Possible Project for a BSc Thesis in Bioinformatics or Computer Science Introduction Since modern web browsers are used for all kinds of tasks ...
AlDaBiWS11Groups
Tragen Sie hier ihre Gruppe mit deren Teilnehmern (voller Name) ein. Zurück zur Veranstaltungsseite. Gruppen Gruppennr. Teilnehmer 1 Teilnehmer 2 Teilnehmer ...
JournalClubS15
Journal Club, SoSe 2015 (19401311) Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biology as well as progress ...
Sequence_analysis_2015
Sequence Analysis, SoSe 2015 (LV Nr. 19401601 (V), 19401602 (Ü), 19401611 (S)) Welcome to the Wiki of Sequence Analysis. This module consists of 2 hours lecture ...
SS15Lecture9Materials
Here is all the material for the lecture 12 * Download the script
SS15Lecture10Materials
Here is all the material for the lecture 12 * Download the script
SS13Lecture8Materials
Here is all the material for the lecture 6 * See last script
SS13Lecture7Materials
Here is all the material for the lecture 6 * Download the script
PMSB_Seqan_2013
Projektmanagement im Softwarebereich SeqAn 2013 Dies ist die Wiki Seite zum Praktikum Projektmanagement im Softwarebereich SeqAn. Alle Zeiten sind s.t. also wie ...
r47 - 11 May 2015 - 08:43 by kiekemo
AlgorithmsWS14
Algorithms (WiSe 2014) Welcome to the Wiki of the MSc lectures Algorithms (VL: 19400501, UE: 19400502) News * The results of the second exam are online ...
SS13Lecture3Materials
Here is all the material for the lecture 3 * Download the script.pdf * Watch a previous lecture as a video lower res or high res
PSMB_Seqan_2015_p3
PSMB_Seqan_2015_p3 Einleitung Eines der bekanntesten und meist genutzten Programme im Kontext der Bioinformatik ist NCBI Blast. Blast ist ein heuristisches Tool zum ...
SS13Lecture4Materials
Here is all the material for the lecture 4 * Download the script * exercise_4.pdf
SS13Lecture1Materials
Here is all the material for the lecture 1 * Download the script.pdf
PSMB_Seqan_2015_p4
PSMB_Seqan_2015_p4 Introduction Trypsin is a serine protease found in the digestive system of many vertebrates, where it hydrolyses proteins. It cleaves peptide chains ...
PMSB_Seqan_2015
Projektmanagement im Softwarebereich, SoSe 2015 (19401511 (S) und 19401513 (P)) Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" SeqAn ...
PSMB_Seqan_2015_p5
PSMB_Seqan_2015_p5 Introduction The q gram(k mer) Index in seqan allows looking up k mers over the index in constant time. However it has two limitations. The first ...
r12 - 26 Mar 2015 - 18:34 by cxpan
SIMDDpAlgo
SIMDDpAlgo SIMD extension of the standard DP algorithms in SeqAn Introduction Newer processors are shipped with 16 registers having an extended width of 128 bit ...
PSMB_Seqan_2015_p2
Page PSMB_Seqan_2015_p2 Hintergrund: Alignieren Genomischer Sequenzen Durch das vergleichen zweier Genome unterschiedlicher Organismen können neue Erkenntnisse bez ...
PSMB_Seqan_2015_palign
PSMB_Seqan_2015_palign Einleitung Paarweise Sequenzalignments liefern wertvolle biologische Informationen über die Identität zweier Sequenzen. Entsprechend ...
BscRawSeqJournaling
BscRawSeqJournaling BSc Thesis: Journaling raw sequences. Weekly Progress Introduction Nowadays sequencing technologies lead to a tremendous number of available ...
WeeklyWorkProgressBScJournalingRawSequences
WeeklyWorkProgressBScJournalingRawSequences Weekly Progress of the BSc Thesis: Journaling Raw Sequences Kick of Meeting ((content)) Week 1 ((content)) Comments ...
AlDaBiWS14Praktikum
AlDaBiWS14Praktikum Diese Seite behandelt das Praktikum zu Algorithmen und Datenstrukturen WS14 (hier geht es zur Vorlesungsseite). Übersicht Das Praktikum besteht ...
ProtLec12MaterialsWS14
Learning units Lecture slides Lecture slides (PPT) Lecture slides (PDF) Exercises Videos
Lecture15MaterialsOptWS14
Here is all the material for the lecture 15 * Download the slides * Additional material: Article Data
Lecture15MaterialsOptWS12
Here is all the material for the lecture 15 * Download the slides * Additional material: Article Data
Lecture14MaterialsOptWS14
Here is all the material for the lecture 14 * Download the slides * Recommended survey article
ProteomicsVL_WS14
Forschungsmodul: Proteomics VL UE (WiSe 2014) Welcome to the Wiki of the MSc lecture Proteomics (VL: 19400901, UE: 19400902) In this lecture we will cover the basics ...
r17 - 03 Feb 2015 - 15:53 by jpfeuffer
AlDaBiWS14CodeReview
Page AlDaBiWS14CodeReview Tragen Sie hier Ihre Gruppe für einen Time Slot des Code Reviews ein. Es gibt 2 parallele Time slots. Jede Gruppe trägt sich nur in eine ...
AProtLec8MaterialsWS14
Learning units Learning unit 8A/B to De novo peptide identification and algorithmic concepts Learning unit 8C to De novo ID with Antilope Learning unit 8D to Complementary ...
r3 - 02 Feb 2015 - 10:09 by jpfeuffer
Lecture13MaterialsOptWS14
Here is all the material for the lecture 13 * Download the slides * Recommended survey article
JournalClubWS14
Journal Club (WiSe 2014) Welcome to the Wiki of the Journal Club (19401311) In this seminar we will present original work in Computational biology as well as progress ...
HiddenMarkovModelsWS14
Page HiddenMarkovModelsWS14 Vorlesung Bitte lesen Sie das Skript vor der Vorlesung durch. Skript: * script.pdf: script.pdf * slides.pdf: slides.pdf Inhalt ...
r3 - 29 Jan 2015 - 13:08 by denisethiel
Lecture12MaterialsOptWS14
Here is all the material for the lecture 12 * Download the slides
ProtLec11MaterialsWS14
Learning units Learning unit 11A to Metabolomics and Metabolites Learning unit 11B to Metabolite Databases Learning unit 11C to Metabolite ID via Spectral Matching ...
ProtLec10MaterialsWS14
Learning units Learning unit 10A to Protein post translational modifications Learning unit 10B to Exptl. techniques for phosphoproteomics Learning unit 10C to Algorithms ...
AlDaBiWS14Groups
Tragen Sie hier ihre Gruppe mit deren Teilnehmern (voller Name) ein. Zurück zum Praktikum oder zur Veranstaltungsseite. Gruppen Gruppennr. Teilnehmer 1 Teilnehmer ...
r33 - 18 Jan 2015 - 19:52 by damazein
Lecture10MaterialsOptWS14
Below you find material for the lecture: * script : rna_lagrange,lara2.pdf.gz
Lecture9MaterialsOptWS14
Below you find material for the lecture: * script : lagrange.pdf * chapter_lagrange.pdf
FormalLanguagesWS14
Page FormalLanguagesWS14 Vorlesung Skript: script Videos: Hier das Vorlesungsvideo aus 2012. Inhalt Datei Material zehnte Übung A10.pdf elfte ...
r3 - 15 Jan 2015 - 13:38 by denisethiel
ProtLec9MaterialsWS14
Learning units Learning unit 9A to Protein inference problem Learning unit 9B to ProteinProphet Learning unit 9C to Protein FDR estimates Lecture slides Lecture ...
r5 - 12 Jan 2015 - 15:24 by XiaoLiang
Lecture8MaterialsOptWS14
for the script see lecture 5.
Lecture7MaterialsOptWS14
for the script see lecture 5.
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Topic revision: r3 - 15 Nov 2006, ProjectContributor
 
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