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Page AlDaBiWS10Groups Tragen Sie hier ihre Gruppe mit deren Teilnehmern (voller Name) ein. Zurück zur Veranstaltungsseite. Gruppen Gruppennr. Teilnehmer 1 ...

OUTDATED! Please use calendar orders at https://www.mi.fu berlin.de/w/Orga/CalendarOrders. Calendar Order Table Name DIN A 4, card board, 6 months on each si...

OUTDATED! Go to: https://wikis.fu berlin.de/display/abi/Beamer Beamer Calendars * Beamer Calendar General (beamer for lending/public use, if need be) * Be...

OUTDATED! Do not use. Office Furniture Hardware / Büroeinrichtung Technik Office Chairs / Bürostühle Room No. total number of chairs *how many are fla...

OUTDATED! Do not use. Page BeverageOrder We plan to regularly order beverages and others from https://www.durstexpress.de Please fill in your orders and give t...

Return to ABI Homepage DEPRECATED! Go to our new wiki: https://wikis.fu berlin.de/display/abi/ Available Wiki Pages Table of Contents (Z A) Teaching ...

OUT OF USE! Go to: https://kvv.imp.fu berlin.de/portal/ * SS 2018 * PMSB SeqAn * SS 2017 * PMSB SeqAn * SS 2016 * Journal Club * ...

OUTDATED! Go to: http://www.mi.fu berlin.de/en/inf/groups/abi/teaching/office hours/ if (window.location.search == "") document.write(' back'); else { var d...

How To Improve Your Slides, Articles etc. This document aims to help to circumvent some pitfalls in data presentation and creating scientific articles and slides....

Theses Page OUTDATED! Go to: https://kvv.imp.fu berlin.de/x/8RK4cp Available topics * If you are interested in doing your thesis in algorithmic bioinformatic...

Thesis Proposals OUTDATED! Go to: https://kvv.imp.fu berlin.de/x/8RK4cp Here is the section for BSc and MSc students. At the beginning of the thesis the student ...

Page CalendarOrders Calendar Order Table Name DIN A 4, card board, 6 months on each side large sized paper calendar, one year on one sheet (fits on door: 8...

Office Furniture Hardware / Büroeinrichtung Technik Office Chairs / Bürostühle Room No. total number of chairs how many are flawed/need replacement *t...

Event Locations A selection of full service locations for meetings, conferences, retreats, and of places to go for lunch/dinner or special events. For the organi...

Improving Location Algorithms in FM indices Implementation of FMtrees A recently published paper improves the location time (retrieving positions in the text) f...

Implementation of Suffix Array Construction Algorithms The SDSL (Succinct Data Structure Library) has various implementations of string indices based on suffix ar...

Projektmanagement im Softwarebereich, SoSe 2018 Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" SeqAn für BSc Studenten. Alle Z...

LArge Genome AligNer (LAGAN) Hintergrund: Alignieren Genomischer Sequenzen Durch das vergleichen zweier Genome unterschiedlicher Organismen können neue Erkenntni...

StundenPlan Reinert / Piro / Marsico SoSe 2017 time: Monday Tuesday Wednesday Thursday Friday 8 10 10 12 SeqAnalys (VL) 051/t9 ...

Detection of homologous regions with FFT Given a set of sequences your task is to compute homologous segments for all pairs of the input set. The detection of hom...

Auswertugn von Binning directories mit Hilfe von Interleaved Bloom filters Hintergrund: Filtern von NGS reads in bins In dem projekt soll (zufällig generierte) ...

LArge Genome AligNer (LAGAN) Hintergrund: Alignieren Genomischer Sequenzen Durch das vergleichen zweier Genome unterschiedlicher Organismen können neue Erkenntni...

In this project a simple motif discovery algorithm should be implemented in SeqAn. Background The goal of motif finding is the detection of novel, unknown sign...

PSMB_Seqan_2017_webassembly PMSB Project at the intersection of C , High performance computing and modern web technologies. Has the possibility to be continued as...

Implementing and evaluating different strategies to assign the set of k mers in a NGS sample to genomic bins Background For metagenomics read mapping it becomes ...

BscRegionFilter Possible Project for a BSc Thesis in Bioinformatics or Computer Science Introduction "Many nucleotide and amino acid sequences are highly repetit...

BscTreeBasedMapAlignment B.Sc. topic proposal in high throughput proteomics Focus * Programming: ** * Math: ** * Biology: * Introduction LC MS data i...

BscSeqAnAlphabetReduction ((short description what this page is about)) introduction "Research on the functional redundancy of amino acids dates back t...

Assessment of off target effects of non coding RNAs Bioinformatics or computational biology is one of the fast growing and most exciting fields in science. Throug...

Projektmanagement im Softwarebereich, SoSe 2017 (19401511 (S) und 19401513 (P)) Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" S...

Optimization (WiSe 2014) Welcome to the Wiki of the MSc lecture Optimization (VL: 19400701, UE: 19400702) News * Results of 2nd exam are online General ...

Implementing 01*0 seed search strategy using the bidirectional FM index in SeqAn Background Approximate string matching is an important subtask in many bioinform...

AlDaBi (WiSe 2014) Willkommen im Wiki der Vorlesung Algorithmen und Datenstrukturen für Bioinformatik (LV Nr. siehe Orte und Zeiten) Die Vorlesung hat 12 credits,...

PSMB_Seqan_2016_p3 Hintergrund Der erste Schritt ein einer Pipeline zur Analyse von Genomvarianten ist das Read Mapping. Dabei soll für jeden NGS Read eigentlich...

Projektmanagement im Softwarebereich, SoSe 2016 (19401511 (S) und 19401513 (P)) Dies ist die Wiki Seite zum Praktikum "Projektmanagement im Softwarebereich" S...

Journal Club, SoSe 2016 (19402911, vormals 19401311) Welcome to the Wiki of the Journal Club In this seminar we will present original work in Computational biolog...

Peptide Indexer using SeqAn and OpenMS Background In Proteomics one subtask for Peptide ID is to search peptide sequences in protein databases. This thesis shall...

Tragen Sie hier ihr Paar mit deren Teilnehmern (voller Name) ein. Zurück zum Praktikum oder zur Veranstaltungsseite. Paare Paarnr. Teilnehmer 1 Teilnehme...

RNA Bioinformatics (S) (19401111), SoSe 2016 Welcome to the Wiki of the seminar RNA Bioinformatics. PLEASE NOTE THAT WE WILL USE THE NEW KVV SYSTEM. CLICK HERE to...

Sequence Analysis, SoSe 2016 *(LV Nr. 19401601 (V), 19401602 (Ü), 19401611 (S)) Welcome to the Wiki of Sequence Analysis. Dear Students. We will use for the lec...

List of current tutors Summer Semester 2015 LV (Title) Tutor's Name Tutor's Email Supervisor (Prof/WiMi) ... ...

Journal Club (WiSe 2015) Welcome to the Wiki of the Journal Club (19402911) In this seminar we will present original work in Computational biology as well as prog...

AlDaBiWS15Praktikum Diese Seite behandelt das Praktikum zu Algorithmen und Datenstrukturen WS15. Übersicht Das Praktikum besteht aus: * Praktikumsvorlesung ...

PSMB_Seqan_2016_p4 In this project you will implement the typical Needleman Wunsch Algorithm, but with a few twists that will hopefully allow "auto vectorization"...

Add BAM support to SeqAn SequenceFile In this project you will be asked to write an interface that will help the Sequence IO of SeqAn to seamlessly read SAM/BAM f...

Assessment of off target effects of non coding RNAs Bioinformatics or computational biology is one of the fast growing and most exciting fields in science. Throug...

Implementation and evaluation of index based seeding strategies in SeqAn Area Substring Indices, read mapping, local alignment, q mer indices Topic The goal of ...

PSMB_Seqan_2016_p1 PMSB Project with possible Bachelor Project. Some experience with Javascript is required, some experience with C or C is recommended. Introdu...

Here is all the material for the lecture 11 * Download the slides * Recommended reading: article by Lustig/Puget (2001)