Algorithmic Bioinformatics

Bachelor Theses

4Theses

Krakau, Sabrina: Overlap Module for NGS Pipeline

Academic Advisor: David Weese , Marcel Schulz (MPI)
Discipline: Bioinformatics
Degree: Bachelor of Science (B.Sc.)
Degree: Oct 22, 2009
Project:
Status: finished

Hauswedell, Hannes: BLAST-like Local Alignments with RazerS

Academic Advisor: Knut Reinert , David Weese
Discipline: Bioinformatics
Degree: Bachelor of Science (B.Sc.)
Degree: Oct 01, 2009
Start: Jul 30, 2009
Project:
Status: finished

The read mapping tool RazerS should be adapted to perform local alignment verification like BLAST. Furthermore the input parameters and the output format of BLAST should be incorporated into RazerS.

Heeger, Felix: Suffix Tree Based Palindrome Detection

Academic Advisor: Knut Reinert , David Weese
Discipline: Bioinformatics
Degree: Bachelor of Science (B.Sc.)
Degree: Sep 28, 2009
Start: Aug 04, 2009
Project:
Status: finished

Using the suffix array implementation available in SeqAn, the goal is to design, develop and experimentally verify an algorithm in SeqAn that finds all maximal complemented RNA palindromes of significant length in a given RNA sequence.

Schmeisky, Holger: Approximate String Matching (Hamming Distance)

Academic Advisor: Manuel Holtgrewe , Knut Reinert
Discipline: Bioinformatics
Degree: Bachelor of Science (B.Sc.)
Project:
Status: finished